Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 529,474 – 529,599 |
Length | 125 |
Max. P | 0.989246 |
Location | 529,474 – 529,564 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 75.99 |
Mean single sequence MFE | -41.72 |
Consensus MFE | -17.90 |
Energy contribution | -19.73 |
Covariance contribution | 1.84 |
Combinations/Pair | 1.07 |
Mean z-score | -1.97 |
Structure conservation index | 0.43 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.538006 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 529474 90 + 23771897 -----GGAGACCGGGCU----UGCGCAGGCGCCUGGAAGAAUCCGAAGCCGAGA-AGAGCGG---CGAGUG----UCC---GCUCUCUUU---UUUCGG-------CUCUGUGGCAACAA -----(((..((((((.----.((....)))))))).....)))((.(((((((-((((.((---((....----..)---)).).))))---))))))-------)))..((....)). ( -38.00) >DroSec_CAF1 3703 91 + 1 -----GGAGACCGGGCU----UGCGCAGGCGCCUGGAAGAAUCCGAAGCGGAGA-AGAGCGG---CGAG---UGGCCC---GCUCUCUUU---UUUCGG-------CUCUGUGGCAACAA -----((((.((((((.----.((....))))))))......((((((.(((((-.((((((---(...---..).))---)))))))))---))))))-------)))).((....)). ( -37.70) >DroSim_CAF1 4527 93 + 1 -----GGAGACCGGGCU----UGCGCAGGCGCCUGGAAGAAUCCGAAGCGGAGA-AGAGCGG---CGAGUG-UGGCCC---GCUCUCUUU---UUUCGG-------CUCUGUGGCAACAA -----((((.((((((.----.((....))))))))......((((((.(((((-.((((((---(.....-..).))---)))))))))---))))))-------)))).((....)). ( -37.40) >DroEre_CAF1 3827 93 + 1 -----GGAGACCGGGCU----UGCGCAGGCGCCUGGAAGAAUCCGGAGCGGAGAAAGAGCGGCGGCGAAAG----GCC---GCUCUCUU----UUUCGG-------CUCUGUGGCAACAA -----(((..((((((.----.((....)))))))).....)))(((((.(((((((((.((((((.....----)))---))))))))----)))).)-------)))).((....)). ( -49.00) >DroYak_CAF1 3894 97 + 1 -----GGAGACCGGGCU----UGCGCAGGCGCCUGGAAGAAUCCAGAGCGGAGAAAGAGCGGCGGCGAGAG----GCC---GCUCUCUUUGGUUUUCGG-------CUCUGUGGCAACAA -----(((..((((((.----.((....)))))))).....)))(((((.(((((((((.((((((.....----)))---)))))))....))))).)-------)))).((....)). ( -43.50) >DroAna_CAF1 5786 109 + 1 UUGGAGGAGAGCGCGCUCAGCUGCGCAGGCUCCAAGGAGAGAGAGAGUGUGAG--AGAGCGA------AAGCCGGUCCGGGGCUCUCUUU---UGUGGGCGAGCUUCUCUGCUGGAAGCC ..(((((((..(((((......))))..((.(((....((((((((((.(((.--.(.((..------..)))..))..).)))))))))---).))))))..)))))))((.....)). ( -44.70) >consensus _____GGAGACCGGGCU____UGCGCAGGCGCCUGGAAGAAUCCGAAGCGGAGA_AGAGCGG___CGAGAG____CCC___GCUCUCUUU___UUUCGG_______CUCUGUGGCAACAA .....((((.((((((......((....))))))))......((((((...(((.(((((.....................))))).)))...)))))).......)))).((....)). (-17.90 = -19.73 + 1.84)
Location | 529,505 – 529,599 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 90.41 |
Mean single sequence MFE | -34.22 |
Consensus MFE | -28.44 |
Energy contribution | -28.60 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.04 |
Mean z-score | -1.61 |
Structure conservation index | 0.83 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.844106 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 529505 94 + 23771897 AUCCGAAGCCGAGA-AGAGCGG---CGAGUG---UCCGCUCUCUUU---UUUCGGCUCUGUGGCAACAAAGUUUCGGUGCCUCAAUUCUUCGAUUCAGAGUCUC ...(((((((((((-((((.((---((....---..))).).))))---)))))))..((.((((.(........).)))).))....))))............ ( -30.40) >DroSec_CAF1 3734 95 + 1 AUCCGAAGCGGAGA-AGAGCGG---CGAG--UGGCCCGCUCUCUUU---UUUCGGCUCUGUGGCAACAAAGUUUCGGUGCCUCAAUUCUUCGAUUCAGAGUCUC .((.(((.((((((-(((((((---(...--..).)))))).....---....(((.(((..((......))..))).)))....))))))).))).))..... ( -32.50) >DroSim_CAF1 4558 97 + 1 AUCCGAAGCGGAGA-AGAGCGG---CGAGUGUGGCCCGCUCUCUUU---UUUCGGCUCUGUGGCAACAAAGUUUCGGUGCCUCAAUUCUUCGAUUCAGAGUCUC .((.(((.((((((-(((((((---(.......).)))))).....---....(((.(((..((......))..))).)))....))))))).))).))..... ( -32.20) >DroEre_CAF1 3858 97 + 1 AUCCGGAGCGGAGAAAGAGCGGCGGCGAAAG---GCCGCUCUCUU----UUUCGGCUCUGUGGCAACAAAGUUUCGGUGCCUCAAUUCUUCGAUUCAGAGUCUC ...((((((.(((((((((.((((((.....---)))))))))))----)))).)))))).((((.(........).))))...(((((.......)))))... ( -40.10) >DroYak_CAF1 3925 101 + 1 AUCCAGAGCGGAGAAAGAGCGGCGGCGAGAG---GCCGCUCUCUUUGGUUUUCGGCUCUGUGGCAACAAAGUUUCGGUGCCUCAAUUCUUCGAUUCAGAGUCUC .....((((((((((((((((((........---))))))))....(((..((((..((.((....)).))..)))).)))....))))))).)))........ ( -35.90) >consensus AUCCGAAGCGGAGA_AGAGCGG___CGAGAG___CCCGCUCUCUUU___UUUCGGCUCUGUGGCAACAAAGUUUCGGUGCCUCAAUUCUUCGAUUCAGAGUCUC .((.(((.((((((.(((((((.............)))))))...........(((.(((..((......))..))).))).....)))))).))).))..... (-28.44 = -28.60 + 0.16)
Location | 529,505 – 529,599 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 90.41 |
Mean single sequence MFE | -32.78 |
Consensus MFE | -28.85 |
Energy contribution | -29.09 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.04 |
Mean z-score | -1.96 |
Structure conservation index | 0.88 |
SVM decision value | 2.16 |
SVM RNA-class probability | 0.989246 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 529505 94 - 23771897 GAGACUCUGAAUCGAAGAAUUGAGGCACCGAAACUUUGUUGCCACAGAGCCGAAA---AAAGAGAGCGGA---CACUCG---CCGCUCU-UCUCGGCUUCGGAU .....(((((.........(((.((((.(((....))).)))).)))((((((..---...((((((((.---(....)---)))))))-).))))))))))). ( -33.10) >DroSec_CAF1 3734 95 - 1 GAGACUCUGAAUCGAAGAAUUGAGGCACCGAAACUUUGUUGCCACAGAGCCGAAA---AAAGAGAGCGGGCCA--CUCG---CCGCUCU-UCUCCGCUUCGGAU ....(((((..((((....))))((((.(((....))).)))).)))))(((((.---..(((((((((....--....---)))))).-)))....))))).. ( -32.40) >DroSim_CAF1 4558 97 - 1 GAGACUCUGAAUCGAAGAAUUGAGGCACCGAAACUUUGUUGCCACAGAGCCGAAA---AAAGAGAGCGGGCCACACUCG---CCGCUCU-UCUCCGCUUCGGAU ....(((((..((((....))))((((.(((....))).)))).)))))(((((.---..(((((((((..........---)))))).-)))....))))).. ( -31.50) >DroEre_CAF1 3858 97 - 1 GAGACUCUGAAUCGAAGAAUUGAGGCACCGAAACUUUGUUGCCACAGAGCCGAAA----AAGAGAGCGGC---CUUUCGCCGCCGCUCUUUCUCCGCUCCGGAU .....((((...........((.((((.(((....))).)))).))((((.((.(----(((((.(((((---.....)))))..)))))).)).)))))))). ( -34.00) >DroYak_CAF1 3925 101 - 1 GAGACUCUGAAUCGAAGAAUUGAGGCACCGAAACUUUGUUGCCACAGAGCCGAAAACCAAAGAGAGCGGC---CUCUCGCCGCCGCUCUUUCUCCGCUCUGGAU (((((((((..((((....))))((((.(((....))).)))).)))))............(((((((((---........))))))))))))).......... ( -32.90) >consensus GAGACUCUGAAUCGAAGAAUUGAGGCACCGAAACUUUGUUGCCACAGAGCCGAAA___AAAGAGAGCGGC___CACUCG___CCGCUCU_UCUCCGCUUCGGAU ....(((((..((((....))))((((.(((....))).)))).)))))(((((........(((((((.............)))))))........))))).. (-28.85 = -29.09 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:36 2006