Locus 1749

Sequence ID 3L_DroMel_CAF1
Location 5,043,821 – 5,043,919
Length 98
Max. P 0.996320
window2701 window2702

overview

Window 1

Location 5,043,821 – 5,043,919
Length 98
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 97.24
Mean single sequence MFE -30.03
Consensus MFE -28.16
Energy contribution -28.36
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.41
Structure conservation index 0.94
SVM decision value 0.97
SVM RNA-class probability 0.891261
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5043821 98 + 23771897
UGCCCCAAAGUUGCUUAAAGUUUUGCCACUUUGCAGCUUGCAAGGAUUUCAGUGGAGGCGCAUCCGGAGUAGUAGCUCAUCCACUCCGGAUAAACUUA
.(((((((((((((..(((((......)))))))))))).....(....)..))).)))..(((((((((.(........).)))))))))....... ( -31.50)
>DroSec_CAF1 250345 98 + 1
UGCCCCAAAGUUGCUUAAAGUUUUGCCACUUUGCAGCUUGCGAGGAUUUCAGUGGAGGCGCAUCCGGAGAAGCAGCUCAUCCACUCCGGAUAAACUUA
.(((((((((((((..(((((......))))))))))))..(((...)))..))).)))..((((((((..............))))))))....... ( -29.34)
>DroSim_CAF1 271263 98 + 1
UGCCCCAAAGUUGCUUAAAGUUUUGCCACUUUGCAGCUUGCGAGGAUUUCAGUGGAGGCGCAUCCGGAGGAGCAGCUCAUCCACUCCGGAUAAACUUA
.(((((((((((((..(((((......))))))))))))..(((...)))..))).)))..((((((((((........)))..)))))))....... ( -30.90)
>DroEre_CAF1 253796 98 + 1
UGCCCCAAAGUUGCUUAAAGUUUUGCCACUUUGCAGCUUGCGAGGAUUUCAGUGAAGGCGCAUCCGGAGGAGCAGCUCAUCCACUCCGGAUAAACUUA
.((.((.(((((((..(((((......)))))))))))).((..(....)..))..)).))((((((((((........)))..)))))))....... ( -27.50)
>DroYak_CAF1 260215 98 + 1
UGCCCCAAAGUUGCUUAAAGUUUUGCCACUUUGCAGCUUGCGAGGAUUUCAUUGGAGGCGCAUCCGGAGGAGCUGCUCAUCCACUCCGGAUAAACUUA
.(((((((((((((..(((((......))))))))))))..(((...)))..))).)))..((((((((((........)))..)))))))....... ( -30.90)
>consensus
UGCCCCAAAGUUGCUUAAAGUUUUGCCACUUUGCAGCUUGCGAGGAUUUCAGUGGAGGCGCAUCCGGAGGAGCAGCUCAUCCACUCCGGAUAAACUUA
.(((((((((((((..(((((......)))))))))))).....(....)..))).)))..((((((((..............))))))))....... (-28.16 = -28.36 +   0.20)

alignment

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secondary structure

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dotplot

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Window 2

Location 5,043,821 – 5,043,919
Length 98
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 97.24
Mean single sequence MFE -31.84
Consensus MFE -30.36
Energy contribution -30.36
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.90
Structure conservation index 0.95
SVM decision value 2.68
SVM RNA-class probability 0.996320
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5043821 98 - 23771897
UAAGUUUAUCCGGAGUGGAUGAGCUACUACUCCGGAUGCGCCUCCACUGAAAUCCUUGCAAGCUGCAAAGUGGCAAAACUUUAAGCAACUUUGGGGCA
...((.((((((((((((........)))))))))))).))....................(((.((((((.((..........)).)))))).))). ( -34.50)
>DroSec_CAF1 250345 98 - 1
UAAGUUUAUCCGGAGUGGAUGAGCUGCUUCUCCGGAUGCGCCUCCACUGAAAUCCUCGCAAGCUGCAAAGUGGCAAAACUUUAAGCAACUUUGGGGCA
......(((((((((.((........)).))))))))).(((.(((..((.....))....(((..(((((......))))).))).....)))))). ( -30.50)
>DroSim_CAF1 271263 98 - 1
UAAGUUUAUCCGGAGUGGAUGAGCUGCUCCUCCGGAUGCGCCUCCACUGAAAUCCUCGCAAGCUGCAAAGUGGCAAAACUUUAAGCAACUUUGGGGCA
......(((((((((..(........)..))))))))).(((.(((..((.....))....(((..(((((......))))).))).....)))))). ( -31.10)
>DroEre_CAF1 253796 98 - 1
UAAGUUUAUCCGGAGUGGAUGAGCUGCUCCUCCGGAUGCGCCUUCACUGAAAUCCUCGCAAGCUGCAAAGUGGCAAAACUUUAAGCAACUUUGGGGCA
...((.(((((((((..(........)..))))))))).))....................(((.((((((.((..........)).)))))).))). ( -31.00)
>DroYak_CAF1 260215 98 - 1
UAAGUUUAUCCGGAGUGGAUGAGCAGCUCCUCCGGAUGCGCCUCCAAUGAAAUCCUCGCAAGCUGCAAAGUGGCAAAACUUUAAGCAACUUUGGGGCA
......(((((((((..(........)..))))))))).(((.((((.((.....))....(((..(((((......))))).)))....))))))). ( -32.10)
>consensus
UAAGUUUAUCCGGAGUGGAUGAGCUGCUCCUCCGGAUGCGCCUCCACUGAAAUCCUCGCAAGCUGCAAAGUGGCAAAACUUUAAGCAACUUUGGGGCA
...((.(((((((((.((........)).))))))))).))....................(((.((((((.((..........)).)))))).))). (-30.36 = -30.36 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:17 2006