Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 5,041,083 – 5,041,203 |
Length | 120 |
Max. P | 0.965590 |
Location | 5,041,083 – 5,041,203 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 99.67 |
Mean single sequence MFE | -30.90 |
Consensus MFE | -30.90 |
Energy contribution | -30.90 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.70 |
Structure conservation index | 1.00 |
SVM decision value | 1.58 |
SVM RNA-class probability | 0.965590 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5041083 120 - 23771897 CAAAACUGAAACUGCGGUUAUUUAGUACGCAAAGCUUUUGAUGUACUUUAUGCGCAAGCAAUGAACUUUUAAUGUGAGCAUUGCCAAAAGCAACAAGGCCGCCAAAAGUGGCAGGAGGAA .....(((..(((((((((....(((((((((.....))).))))))...(((....((((((.((.......))...)))))).....)))....))))))....)))..)))...... ( -30.90) >DroSec_CAF1 247551 120 - 1 CAAAACUGAAACUGCGGUUAUUUAGUACGCAAAGCUUUUGAUGUACUUUAUGCGCAAGCAAUGAACUUUUAAUGUGAGCAUUGCCAAAAGCAACAAGGCCGCCAAAAGUGGCAGGAGGAA .....(((..(((((((((....(((((((((.....))).))))))...(((....((((((.((.......))...)))))).....)))....))))))....)))..)))...... ( -30.90) >DroSim_CAF1 268413 120 - 1 CAAAACUGAAACUGCGGUUAUUUAGUACGCAAAGCUUUUGAUGUACUUUAUGCGCAAGCAAUGAACUUUUAAUGUGAGCAUUGCCAAAAGCAACAAGGCCGCCAAAAGUGGCAGGAGGAA .....(((..(((((((((....(((((((((.....))).))))))...(((....((((((.((.......))...)))))).....)))....))))))....)))..)))...... ( -30.90) >DroEre_CAF1 250999 120 - 1 CAAAACUGAAACUGCGGUUAUUUAGUACGCAAAGCUUUUGAUGUACUUUAUGCGCAAGCAAUGAACUUUUAAUGUGAGCAUUGCCAAAAGCAACAAGGCCGCCAAAAGUGGCAGGAGGAA .....(((..(((((((((....(((((((((.....))).))))))...(((....((((((.((.......))...)))))).....)))....))))))....)))..)))...... ( -30.90) >DroYak_CAF1 257368 120 - 1 CAAAACUGAAACUGCGGUUAUUUAGUACGCAAAGCUAUUGAUGUACUUUAUGCGCAAGCAAUGAACUUUUAAUGUGAGCAUUGCCAAAAGCAACAAGGCCGCCAAAAGUGGCAGGAGGAA .....(((..(((((((((....(((((((((.....))).))))))...(((....((((((.((.......))...)))))).....)))....))))))....)))..)))...... ( -30.90) >consensus CAAAACUGAAACUGCGGUUAUUUAGUACGCAAAGCUUUUGAUGUACUUUAUGCGCAAGCAAUGAACUUUUAAUGUGAGCAUUGCCAAAAGCAACAAGGCCGCCAAAAGUGGCAGGAGGAA .....(((..(((((((((....(((((((((.....))).))))))...(((....((((((.((.......))...)))))).....)))....))))))....)))..)))...... (-30.90 = -30.90 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:02 2006