Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 5,032,869 – 5,032,963 |
Length | 94 |
Max. P | 0.652362 |
Location | 5,032,869 – 5,032,963 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 82.27 |
Mean single sequence MFE | -27.83 |
Consensus MFE | -16.72 |
Energy contribution | -16.55 |
Covariance contribution | -0.17 |
Combinations/Pair | 1.12 |
Mean z-score | -2.28 |
Structure conservation index | 0.60 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.652362 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5032869 94 - 23771897 UGGAGCA------------------CAGGCAGCAGUAAUGAACUGUUGCUAUUGUUUGUUAUUAGUUUUUAUGGCUGGUACUGUUGCUUUUGG--UUUCGUUAUUGCCGCCGGU .((((((------------------(((((((((((.....))))))))..........((((((((.....))))))))))).))))))(((--(..((....))..)))).. ( -27.50) >DroSec_CAF1 239468 94 - 1 UGGAGCA------------------CAGGCAGCAGUAAUGAACUGUUGCUAUUGUUUGUUAUUAGUUUUUAUGGCUGGUGCUGUUGCUUUUGG--UUUCGUUAUUGCCGCUGGU .((((((------------------(((((((((((.....))))))))..........((((((((.....))))))))))).)))))).((--(.........)))...... ( -26.10) >DroSim_CAF1 260339 96 - 1 UGGAGCA------------------CAGGCAGCAGUAAUGAACUGUUGCUAUUGUUUGUUAUUAGUUUUUAUGGCUGGUGCUGUUGCUUUUCGGUUUUCGUUAUUGCCGCUGGU .((((((------------------(((((((((((.....))))))))..........((((((((.....))))))))))).)))))).((((..........))))..... ( -27.20) >DroEre_CAF1 242817 81 - 1 UGGAGCA------------------CAGACAGCAGUAAUGAACUGUUGCUAUUGUUUGUUAUUAGUUUUUAUGGCUGGUGCUGUUGC-UUUUG--UGUCGUU------------ .((((((------------------(((.((.((((...((((((..((........))...)))))).....)))).))))).)))-)))..--.......------------ ( -22.40) >DroYak_CAF1 248660 96 - 1 UGGAGCA----------------CACAGACAGCAGUAAUGAACUGUUGCUAUUGUUUGUUAUUAGUUUUUAUGGCUGUUGCUGUUGCGUUUCG--UUUCGUUAUUGCCGCUGCU .(((((.----------------(((((.(((((((...((((((..((........))...)))))).....)))))))))).)).)))))(--(..((.......))..)). ( -25.80) >DroAna_CAF1 250012 111 - 1 UGGGGCGCUGCUUGGCAGCCAAACGCAGACAGCAGUAAUGAACUGUUGCUAUUGUUUGUUAUUAGUUUUUAUGGCUGUUGCCGUAACUGUUGG--CAUUGUUAUUGCCGCUGG- .(.((((((....))).(((((..((((((((.((((((.....)))))).))))))))...((((...((((((....))))))))))))))--).........))).)...- ( -38.00) >consensus UGGAGCA__________________CAGACAGCAGUAAUGAACUGUUGCUAUUGUUUGUUAUUAGUUUUUAUGGCUGGUGCUGUUGCUUUUGG__UUUCGUUAUUGCCGCUGGU .(.((((..................(((((((.((((((.....)))))).))))))).((((((((.....)))))))).)))).)........................... (-16.72 = -16.55 + -0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:53 2006