Locus 1737

Sequence ID 3L_DroMel_CAF1
Location 5,032,037 – 5,032,137
Length 100
Max. P 0.578586
window2676

overview

Window 6

Location 5,032,037 – 5,032,137
Length 100
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 79.87
Mean single sequence MFE -20.80
Consensus MFE -13.72
Energy contribution -13.63
Covariance contribution -0.08
Combinations/Pair 1.21
Mean z-score -1.35
Structure conservation index 0.66
SVM decision value 0.09
SVM RNA-class probability 0.578586
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5032037 100 + 23771897
--CUAUCUCUUUCACUCAAGGCUACCCGUCCCUCUCCCAACCGUU---GUGCACCUGA-------AU-----UUGUACACCUGUUCGCAAGCUUAUGCAUUGUGAACAUGCGAGCUA
--.................((((...(((.............(.(---(((((.....-------..-----.)))))).)(((((((((((....)).))))))))).))))))). ( -22.20)
>DroSec_CAF1 238685 100 + 1
--CUAUCUCUUUCACUCAAGGCUACCCGUCCCUCUCCCACCCGUU---GUGCAGCUGA-------AU-----UCGUACACCUGUUCGUAAGCUUAUGCAUUGUGAACAUGCGAGCUA
--.................((((...(((.............(.(---((((......-------..-----..))))).)(((((((((((....)).))))))))).))))))). ( -15.60)
>DroSim_CAF1 259540 100 + 1
--CUAUCUCUUUCACUCAAGGCUACCCGUCCCUCUCCCACCCGUU---GUGCAGCUGA-------AU-----UCGUACACCUGUUCGUAAGCUUAUGCAUUGUGAACAUGCGAGCUA
--.................((((...(((.............(.(---((((......-------..-----..))))).)(((((((((((....)).))))))))).))))))). ( -15.60)
>DroEre_CAF1 242077 99 + 1
--CUCGCUCCUUC-CUUAAGGCUACCCAUCCCCCUCCCACCCGCU---GUGCACCUGC-------AU-----UUGUACACCUGUUCGUAAGCUUAUGCAUUGUGAACAUGCGAGCUA
--(((((.((((.-...)))).....................(.(---(((((.....-------..-----.)))))).)(((((((((((....)).))))))))).)))))... ( -20.90)
>DroYak_CAF1 247833 103 + 1
--CUCUCUCUAUCACUCAAGGCUACCCGUCCCUCUCUCUCUCUCUCUCGUGCACCUGA-------AU-----GUGUACACCUGUUCGCAAGCUUAUGCAUUGUGAACAUGCGAGCUA
--.................((((...(((...................((((((....-------..-----))))))...(((((((((((....)).))))))))).))))))). ( -24.70)
>DroAna_CAF1 249254 106 + 1
CUCUCUCUAUUUUAUGCAUGUUUUUCUAUCUCUUUC--------U---AUGCACCUGAUGUGUGUAUUUUCUCUGUACACCUGUUCAGGAGCUUAUGCAUUGUGAACAUGCAAGCUA
..............(((((((((.............--------.---.....(((((.(.((((((.......)))))))...))))).((....)).....)))))))))..... ( -25.80)
>consensus
__CUAUCUCUUUCACUCAAGGCUACCCGUCCCUCUCCCACCCGUU___GUGCACCUGA_______AU_____UUGUACACCUGUUCGUAAGCUUAUGCAUUGUGAACAUGCGAGCUA
...................((((.........................((((......................))))...(((((((((((....)).)))))))))....)))). (-13.72 = -13.63 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:52 2006