Locus 1735

Sequence ID 3L_DroMel_CAF1
Location 5,031,471 – 5,031,584
Length 113
Max. P 0.855164
window2674

overview

Window 4

Location 5,031,471 – 5,031,584
Length 113
Sequences 6
Columns 115
Reading direction reverse
Mean pairwise identity 91.96
Mean single sequence MFE -30.07
Consensus MFE -26.49
Energy contribution -26.97
Covariance contribution 0.47
Combinations/Pair 1.09
Mean z-score -1.66
Structure conservation index 0.88
SVM decision value 0.80
SVM RNA-class probability 0.855164
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5031471 113 - 23771897
AGGAUGUUCGUUAGGCGGCACUUAAAUGCCGUCAAAUUUGCA-CUGUCCGAAGGACAA-AAGUAUUUGUGUAAAACAGACGAUAAGCUCACUUAUUGAUCCACUUGCAAGUGUAG
.............(((((((......)))))))..((((((.-.(((((...))))).-((((.(((((.....)))))(((((((....)))))))....)))))))))).... ( -31.60)
>DroSec_CAF1 238112 113 - 1
AGGAUGUUCGUUAGGCGGCACUUAAAUGCCGUCAAAUUUGCA-CUGUCCGAAGGACAA-AAGUAUUUGUGUAAAACAGACGAUAAGCUCACUUAUUGAUCCACUUGCAAGUGUAG
.............(((((((......)))))))..((((((.-.(((((...))))).-((((.(((((.....)))))(((((((....)))))))....)))))))))).... ( -31.60)
>DroSim_CAF1 258966 113 - 1
AGGAUGUUCGUUAGGCGGCACUUAAAUGCCGACAAAUUUGCA-CUGUCCGAAGGACAA-AAGUAUUUGUGUAAAACAGACGAUAAGCUCACUUAUUGAUCCACUUGCAAGUGUAG
.............(.(((((......))))).)..((((((.-.(((((...))))).-((((.(((((.....)))))(((((((....)))))))....)))))))))).... ( -27.20)
>DroEre_CAF1 241504 113 - 1
AGGAUGUUCGUUAGGCGGCACUUAAAUGCCGUCAAAUUUGCA-GUGUCCGUUGGACAA-AAGUAUUUGUGUAAAACAGACGAUAAGCUCACUUAUUGAUCCACUUGCAAGUGUAG
.............(((((((......)))))))..((((((.-.(((((...))))).-((((.(((((.....)))))(((((((....)))))))....)))))))))).... ( -31.70)
>DroYak_CAF1 247241 113 - 1
AGGAUGUUCGUUAGGCGGCACUUAAAUGCCGUCAAAUUUGCA-CUGUCCGCUGGACAA-AAGUAUUUGUGUAAAACAGACGAUAAGCUCACUUAUUGAUCCACUUGCAAGUGUAG
.............(((((((......)))))))..((((((.-.(((((...))))).-((((.(((((.....)))))(((((((....)))))))....)))))))))).... ( -31.60)
>DroAna_CAF1 248676 109 - 1
AGGAGCU------GACGGCACUUAAAUUCCGUCAAAUUCACAAACGUCCAAUGUACAAAAAGUAUUUGUGUAAUUCGGACGAUAAGCUCACUUAUUGAUCCACUUGUAAGUGUAG
..(((((------(((((..........)))))...........((((((((..(((((.....)))))...))).)))))...)))))((((((..........)))))).... ( -26.70)
>consensus
AGGAUGUUCGUUAGGCGGCACUUAAAUGCCGUCAAAUUUGCA_CUGUCCGAAGGACAA_AAGUAUUUGUGUAAAACAGACGAUAAGCUCACUUAUUGAUCCACUUGCAAGUGUAG
.............(((((((......)))))))..((((((...(((((...)))))..((((.(((((.....)))))(((((((....)))))))....)))))))))).... (-26.49 = -26.97 +   0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:50 2006