Locus 1733

Sequence ID 3L_DroMel_CAF1
Location 5,010,678 – 5,010,784
Length 106
Max. P 0.898839
window2672

overview

Window 2

Location 5,010,678 – 5,010,784
Length 106
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 91.29
Mean single sequence MFE -35.20
Consensus MFE -30.35
Energy contribution -30.63
Covariance contribution 0.28
Combinations/Pair 1.11
Mean z-score -2.00
Structure conservation index 0.86
SVM decision value 1.00
SVM RNA-class probability 0.898839
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5010678 106 - 23771897
AUCGAAUUCAGUUAGGGUAUCAAAUAUUAUUACAACCGGUAAUAU-UCCGACUGGCCAGAGUUGAUGGCCAUGUCUUGCCGUGGGCCACCGCAUGUUGCCAACUCGG-------
..(((.....(((..((((........))))..))).((((((((-...(((((((((.......)))))).))).....((((....))))))))))))...))).------- ( -31.40)
>DroSec_CAF1 231144 106 - 1
AUCGAAUUCAGUAAGGGUAUCAAAUAUUAUUACAACCGGUAAUAU-UCCGACUGGCCAGAGUUGAUGGCCAUGUCUUGCCGCGGGCCACCGCAUGUUGCCAACUGGG-------
.......(((((...(((................)))((((((((-...(((((((((.......)))))).))).....((((....)))))))))))).))))).------- ( -35.19)
>DroSim_CAF1 252011 106 - 1
AUCGAAUUCAGUAAGGGUAUCAAAUAUUAUUACAACCGGUAAUAU-UCCGACUGGCCAGAGUUGAUGGCCAUGUCUUGCCGCGGGCCACCGCAUGUUGCCAACUCGG-------
..(((.....((((..((((...))))..))))....((((((((-...(((((((((.......)))))).))).....((((....))))))))))))...))).------- ( -35.60)
>DroEre_CAF1 234404 113 - 1
AUCGCAACCUGUAAGGGUAUCAAAUAUUAUUACAACCGGCAAUAU-UCCGACUGGCCAGAGUUGAUGGCCAUGUCUUGCCGCGGGCCACCGCAUGUUGCCAACUCAGGAUUCAG
.......((((....((((.((...............(((((...-...(((((((((.......)))))).))))))))((((....)))).)).))))....))))...... ( -39.50)
>DroYak_CAF1 239914 106 - 1
AUCGAGUCCAGUGAGGGUAUCAAAUAUUAUUACAACCGGUAAUAU-UCCGACUGGCCAGAGUUGAUGGCCAUGUCUUGCCGUGGGCCACCGCAUGUUGCCAACUCAG-------
...((((...((((..((((...))))..))))....((((((((-...(((((((((.......)))))).))).....((((....)))))))))))).))))..------- ( -35.80)
>DroAna_CAF1 241585 107 - 1
ACCGACUCCUGUUAGGGUACCAAAUAUUAUUACAACUGGUAAUAUUUCCGACUGGCCAGAGUUGAUGGCCAUGUCUUGCCGGUGGCCACCGCAUGUUGCCAACCCAG-------
...(((....))).((((((((((((((((((....)))))))))))..(((((((((.......)))))).))).....)))(((.((.....)).))).))))..------- ( -33.70)
>consensus
AUCGAAUCCAGUAAGGGUAUCAAAUAUUAUUACAACCGGUAAUAU_UCCGACUGGCCAGAGUUGAUGGCCAUGUCUUGCCGCGGGCCACCGCAUGUUGCCAACUCAG_______
..........((((..(((.....)))..))))....((((((((....(((((((((.......)))))).))).....((((....)))))))))))).............. (-30.35 = -30.63 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:48 2006