| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,009,803 – 5,009,906 |
| Length | 103 |
| Max. P | 0.700557 |
| Location | 5,009,803 – 5,009,906 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 83.62 |
| Mean single sequence MFE | -28.23 |
| Consensus MFE | -22.77 |
| Energy contribution | -23.43 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.700557 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5009803 103 - 23771897 GCUCGUAACCUCCA-----UUUUCCCAGAUGCCCCCACUUGCCCC---UGCAAACAAAUUCAACUUGAAGUGAACUCGACUUCGAGUUGACUUUUGACCGUCAAACGGCGG--------- ..............-----......(((..((........))..)---))....((((.((((((((((((.......))))))))))))..)))).(((((....)))))--------- ( -26.00) >DroPse_CAF1 289795 108 - 1 GCUUGGUGCUGCCC-----CU-----UGA--CCCCCACUUGCCCCCAUUGCAAACAAAUUCAACUGGAAGUGAACUCAACUUGGAGUUGACUUUUGACCGUCAAACGGCGGCAAGCGGCA (((...(((((((.-----.(-----(((--(......((((.......)))).((((.((((((..((((.......))))..))))))..))))...)))))..)))))))...))). ( -35.90) >DroSec_CAF1 230269 103 - 1 GCUCGUAACCUCCA-----UUUUCCCAGAUGCCCCCACUUGCCCC---UGCAAACAAAUUCAACUUGAAGUGAACUCGACUUCGAGUAGACUUUUGACCGUCAAACGGCGG--------- ..............-----......(((..((........))..)---))....((((.((.(((((((((.......))))))))).))..)))).(((((....)))))--------- ( -21.90) >DroEre_CAF1 233527 103 - 1 GCUCGUAACCUCCA-----UUUUCCCAGAUGCCCCCACUUGCCCC---UGCAAACAAAUUCAACUUGAAGUGAACUCGACUUCGAGUUGACUUUUGACCGUCAAACGGCGG--------- ..............-----......(((..((........))..)---))....((((.((((((((((((.......))))))))))))..)))).(((((....)))))--------- ( -26.00) >DroYak_CAF1 239027 103 - 1 GCUCGUAACCUCCA-----UUUUCCCAGAUGGCCCCACUUGCCCC---UGCAAACAAAUUCAACUUGAAGUGAACUCGACUUCGAGUUGACUUUUGACCGUCAAACGGCGG--------- ((..((((...(((-----((......)))))......))))...---.))...((((.((((((((((((.......))))))))))))..)))).(((((....)))))--------- ( -29.20) >DroAna_CAF1 240785 107 - 1 UCU-GCAAUCCUUGUUUUCUGUUCCACGACCCCGGCACUUGGCCC---GGCAAACAAAUUCAACUUGAAGUGAACUCGACUUCGAGUUGACUUUUGACCGUCAAACGGCGG--------- ...-.......((((((.(((..(((.(.(....)..).)))..)---)).))))))..((((((((((((.......)))))))))))).......(((((....)))))--------- ( -30.40) >consensus GCUCGUAACCUCCA_____UUUUCCCAGAUGCCCCCACUUGCCCC___UGCAAACAAAUUCAACUUGAAGUGAACUCGACUUCGAGUUGACUUUUGACCGUCAAACGGCGG_________ ......................................((((.......)))).((((.((((((((((((.......))))))))))))..)))).(((((....)))))......... (-22.77 = -23.43 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:47 2006