Locus 1730

Sequence ID 3L_DroMel_CAF1
Location 5,007,600 – 5,007,695
Length 95
Max. P 0.817172
window2669

overview

Window 9

Location 5,007,600 – 5,007,695
Length 95
Sequences 4
Columns 95
Reading direction reverse
Mean pairwise identity 98.42
Mean single sequence MFE -33.08
Consensus MFE -30.99
Energy contribution -31.30
Covariance contribution 0.31
Combinations/Pair 1.03
Mean z-score -2.14
Structure conservation index 0.94
SVM decision value 0.67
SVM RNA-class probability 0.817172
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5007600 95 - 23771897
UCACUUGGCGACAGUUAGUCAGCUGCAUUGUUGCUGUUUGCUGCUGCGGUCGCGUUUUUCAUUGUCGGCAUGCGGCAGCCGCAUUUUUCAAUCCC
......((((((((((((....))).)))))))))((..(((((((((((((((........)).)))).))))))))).))............. ( -33.80)
>DroSec_CAF1 228077 95 - 1
UCACUUGGCGGCAGUUAGUCAGCUGCAUUGUUGCUGUUUGCUGCUGCGGUCGCGUUUUUCAUUGUCGGCAUGCGGCAGCCGCAUUUUUCAAUCCC
......((((((((((((....))).)))))))))((..(((((((((((((((........)).)))).))))))))).))............. ( -33.30)
>DroEre_CAF1 231322 95 - 1
UCACUUGGCGGCAGUUAGUCAGAUGCAUUGUUGCUGUUUGCCGCUGCGGUCGCGUUUUUCAUUGUCGGCAUGCGGCAGCCGCAUUUUUCAAUCCC
.......(((((.....(.((((((((....))).))))).)((((((((((((........)).)))).)))))).)))))............. ( -31.90)
>DroYak_CAF1 236746 95 - 1
UCACUUGGCGGCAGUUAGUCAGCUGCAUUGUUGCUGUUUGCUGCUGCGGUCGCGUUUUUCAUUGUCGGCAUGCGGCAGCCGCAUUUUUCAAUCCC
......((((((((((((....))).)))))))))((..(((((((((((((((........)).)))).))))))))).))............. ( -33.30)
>consensus
UCACUUGGCGGCAGUUAGUCAGCUGCAUUGUUGCUGUUUGCUGCUGCGGUCGCGUUUUUCAUUGUCGGCAUGCGGCAGCCGCAUUUUUCAAUCCC
......((((((((((((....))).)))))))))((..(((((((((((((((........)).)))).))))))))).))............. (-30.99 = -31.30 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:45 2006