Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 527,932 – 528,033 |
Length | 101 |
Max. P | 0.609627 |
Location | 527,932 – 528,033 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 75.58 |
Mean single sequence MFE | -33.62 |
Consensus MFE | -14.00 |
Energy contribution | -14.28 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.18 |
Mean z-score | -1.82 |
Structure conservation index | 0.42 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.609627 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 527932 101 + 23771897 CUUC----------A-CACUUCCCUCAUGGGUUUCCU-----AUGU-AAAUCAUUUAAAGGGAAAUUGUUGCACAACUUUAACGAGUUGAUUGG-AGGGGGAGGGGUGAGGCUUACUGC ((((----------(-(.((((((((...((((((((-----...(-((.....)))..))))))))......((((((....)))))).....-.)))))))).))))))........ ( -33.10) >DroSec_CAF1 2161 100 + 1 CUUC----------A-CACUGCCC-CAUGGGUUUCCU-----AUGU-AAAUCAUUUAAAGGGAAAUUGUUGCACAACUUUAACGAGUCGUUGGC-GGGGGGAGGGGUGAGGCUAACUGC ((((----------(-(.((.(((-(...((((((((-----...(-((.....)))..))))))))..(((.((((...........))))))-))))).))..))))))........ ( -30.70) >DroEre_CAF1 2172 100 + 1 CCUC----------UGCAUUUCCC-CAUGGGUUUCCU-----AUGU-AAAUCAUUUAAAGGGAAAUUGUUGCACAACUUUAACGAGUCGUUGGC-C-GGGGAGGGGGGAGGCUUACUGC ((((----------(.(.((((((-(...((((((((-----...(-((.....)))..))))))))...((.((((...........))))))-.-)))))))).)))))........ ( -30.50) >DroYak_CAF1 2257 111 + 1 CCUCCCUCUCCUUCGUCAUUUCCC-CGAGGGUUUUCU-----AUGU-AAAUCAUUUAAAGGGAAAUUGUUGCACAACUUUAACGAGCCGUUGGC-CAGGGGAGGGGUGCAGCUUACUGC ..((((((((((..((((((((((-....(((((...-----....-))))).......))))))((((((........)))))).....))))-.)))))))))).((((....)))) ( -33.80) >DroAna_CAF1 3620 102 + 1 CCCU----------UCCCCUUCCC-CUUCCACUUCCCACUUGAUGCAAAAUGAUUUAAAGAGAAAUUGUUGCACAACUUUAACGAU--GGUGCCACGGGGGAGGGGGAAGGU----GGG .(((----------((((((((((-((..((((((....(((.(((((...(((((......))))).)))))))).......)).--))))....))))))))))))))).----... ( -40.00) >consensus CCUC__________A_CACUUCCC_CAUGGGUUUCCU_____AUGU_AAAUCAUUUAAAGGGAAAUUGUUGCACAACUUUAACGAGUCGUUGGC_CGGGGGAGGGGUGAGGCUUACUGC ..................((((((.(...((((((((.....(((......))).....))))))))((((........))))..............)))))))............... (-14.00 = -14.28 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:25 2006