Locus 1728

Sequence ID 3L_DroMel_CAF1
Location 5,005,666 – 5,005,768
Length 102
Max. P 0.607122
window2664

overview

Window 4

Location 5,005,666 – 5,005,768
Length 102
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 95.80
Mean single sequence MFE -19.64
Consensus MFE -18.10
Energy contribution -17.94
Covariance contribution -0.16
Combinations/Pair 1.05
Mean z-score -1.15
Structure conservation index 0.92
SVM decision value 0.15
SVM RNA-class probability 0.607122
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5005666 102 + 23771897
CACAAGCAAGGAGUGUCCAGCUGCCAGACCUGUUGUUCUACAUAAUUAAAAGUGAAACAGCAGCAUCCUUGACGCCUGAACUCAAAGAAAACGAACAAAAAA-------
.....(((((((..(((.........)))((((((((.(((..........))).))))))))..)))))).).............................------- ( -18.00)
>DroSec_CAF1 226198 102 + 1
CACAAGCAAGGAGUGUCCAGCUGCCAGACCUGUUGUUCUACAUAAUUAAAAGUGAAACAGCAGCAUCCUUGACGCCUGAACUCAAAGAAAACGAACAAAAAA-------
.....(((((((..(((.........)))((((((((.(((..........))).))))))))..)))))).).............................------- ( -18.00)
>DroSim_CAF1 246187 102 + 1
CACAAGCAAGGAGUGUCCAGCUGCCAGACCUGUUGUUCUACAUAAUUAAAAGUGAAACAGCAGCAUCCUUGACGCCUGAACUCAAAGAAAACGAACAAAAAA-------
.....(((((((..(((.........)))((((((((.(((..........))).))))))))..)))))).).............................------- ( -18.00)
>DroEre_CAF1 229469 102 + 1
CACAAGCAGGGAGUGUCCAGCUGCCAGACCUGUUGUUCUACAUAAUUAAAAGUGAAACAGCAGCAUCCUUGACGCCUGAACUCAAGGAAAACGAACAAAAAA-------
.....((.((.(((.....))).)).....(((((((.(((..........))).))))))))).(((((((.(......))))))))..............------- ( -23.70)
>DroYak_CAF1 234658 109 + 1
CACAAGCAAGGAGUGUCCAGCUGCCAGACCUGUUGUUCUACAUAAUUAAAAGUGAAACAGCAGCAUCCUUGACGCCUGAACUCAAAGGAAACGAACAAAACAAAAAAAA
.....(((((((..(((.........)))((((((((.(((..........))).))))))))..)))))).).(((........)))..................... ( -20.50)
>consensus
CACAAGCAAGGAGUGUCCAGCUGCCAGACCUGUUGUUCUACAUAAUUAAAAGUGAAACAGCAGCAUCCUUGACGCCUGAACUCAAAGAAAACGAACAAAAAA_______
.....(((((((..(((.........)))((((((((.(((..........))).))))))))..)))))).).................................... (-18.10 = -17.94 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:40 2006