Locus 1727

Sequence ID 3L_DroMel_CAF1
Location 5,004,787 – 5,004,888
Length 101
Max. P 0.956019
window2663

overview

Window 3

Location 5,004,787 – 5,004,888
Length 101
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 93.13
Mean single sequence MFE -23.98
Consensus MFE -20.20
Energy contribution -20.40
Covariance contribution 0.20
Combinations/Pair 1.08
Mean z-score -1.82
Structure conservation index 0.84
SVM decision value 1.46
SVM RNA-class probability 0.956019
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5004787 101 - 23771897
AGCUGCAACUGGGCCAUAAAUCAAGCGUGUAGGGCUAUAAAAAAACAAGAGUCGCGAAAGGGGGAAAUUAAUAUUUUUGUUGGGCUAAGAAGAUGGCGGCA
.(((((..((.((((........(((.......))).......((((((((((.(....).)..........))))))))).))))....))...))))). ( -24.60)
>DroSec_CAF1 225343 100 - 1
AGCUGCAACUGGGCCAUAAAUCAAGCGUGUAAGGCUAUAAA-AAACAAGAGUCGCGAAAGGGGGAAAUUAAUAUUUUAGUUGGGCUAAGAAGAUGGCGGCG
.(((((..((.((((.....((.(((.......))).....-.........((.(....).))))((((((....)))))).))))....))...))))). ( -22.70)
>DroSim_CAF1 245132 100 - 1
AGCUGCAACUGGGCCAUAAAUCAAGCGUGUAAGGCUAUAAA-AAACAAGAGUCGCGAAAGGGGGAAAUUAAUAUUUUAGUUGGGCUAAGAAGAUGGCGGCG
.(((((..((.((((.....((.(((.......))).....-.........((.(....).))))((((((....)))))).))))....))...))))). ( -22.70)
>DroEre_CAF1 228625 99 - 1
AGCUGCAACUGGGCCAUAAAUCAUGCGUGUAGGGCUAUAAA--AACAAGAGUCGCGAAAGGGGAAAAUUAAUAUUUUAGUUGGGCUAAGAUGGCAGCAGCA
.(((((..(((.(((((.....))).)).))).(((((...--........((.(....).))...........(((((.....)))))))))).))))). ( -26.00)
>DroYak_CAF1 233775 100 - 1
AGCUGCAACUGCGCCAUAAAUCAAGCGUGUGUGGCUAUAAA-AAACAAGAGUCGCGAAAGGGGGAAAUUAAUAUUUUAGUUGGGCUAAGAAGAAAGCAGCA
.(((((......((((((...(....)..))))))......-.........((.(....).))..........((((((.....)))))).....))))). ( -23.90)
>consensus
AGCUGCAACUGGGCCAUAAAUCAAGCGUGUAAGGCUAUAAA_AAACAAGAGUCGCGAAAGGGGGAAAUUAAUAUUUUAGUUGGGCUAAGAAGAUGGCGGCA
.(((((..((.((((........(((.......))).......(((.....((.(....).))(((((....))))).))).))))....))...))))). (-20.20 = -20.40 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:39 2006