Locus 1724

Sequence ID 3L_DroMel_CAF1
Location 5,001,042 – 5,001,145
Length 103
Max. P 0.703563
window2656

overview

Window 6

Location 5,001,042 – 5,001,145
Length 103
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 78.83
Mean single sequence MFE -29.27
Consensus MFE -19.34
Energy contribution -19.28
Covariance contribution -0.05
Combinations/Pair 1.15
Mean z-score -1.44
Structure conservation index 0.66
SVM decision value 0.36
SVM RNA-class probability 0.703563
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5001042 103 - 23771897
GGCCAAGUGCUCGGUUUCGUUUGUACCACCAGUGCGUGACGCAUUCCGGCUGCACUUGAAACUUGAGAUUUCCUCCCCUGGUUUUUCG-CCC----CCUACCGAUUUU------------
((((((((((((((..((((((((((.....))))).)))).)..))))..)))))))......((((...((......))..)))))-)).----............------------ ( -30.10)
>DroSec_CAF1 221673 106 - 1
GGCCAAGUGCUCUGUUUCGUUUGUACCACCAGUGCGUGACGCAUUCCGUCUGCACUUGAAACUUGAGAUUUCCUCCCCUGGUUUUUAG-CUCCCC-CCUCCCGAUUUU------------
((((((((((............((((.....))))..((((.....)))).)))))))(((((.(((.....)))....)))))...)-))....-............------------ ( -21.60)
>DroSim_CAF1 241453 107 - 1
GGCCAAGUGCUCGGUUUCGUUUGUACCACCAGUGCGUGACGCAUUCUGGCUGCACUUGAAACUUGAGAUUUCCUCCCCUGGUUUUUCG-CCCCCCUCCACCCGAUUUU------------
((((((((((..(((.........))).((((((((...))))..))))..)))))))......((((...((......))..)))))-)).................------------ ( -28.30)
>DroEre_CAF1 224780 110 - 1
GGCCAAGUGCUCGGUUUCGUUUGUACCACCAGUGCGUGACGCAUUCCGGCUGCACUUGAAACUUGAGAUUUCCUCCCCGGAAUUUCCCGCCC--------CCGAAUUUCC--CUCCGCCC
((((((((((((((..((((((((((.....))))).)))).)..))))..)))))))......(((((((......(((......)))...--------..))))))).--....))). ( -32.20)
>DroYak_CAF1 229746 99 - 1
GGCCAAGUGCUCGGUUUCGUUUGUACCACCAGUGCGUGACGCAUUCCGGGUGCACUUGAAACUUGAGAUUUCCCCCACUGAAUUUUCC-CCC--------CCGAUUUU------------
((..((((.((((((((((..((((((...((((((...))))))...))))))..)))))).))))))))..)).............-...--------........------------ ( -28.00)
>DroAna_CAF1 231724 117 - 1
AGGCAAGUGCUUGGUUUCGUUUAUGCCACCAGUGCGUGACGCAUUCCGGCUGCACUUGAAACUUGAAACUAGCACUGCCACUCU--CA-CUCCCACUCCCCCGAAUAUCCUCUUCGGAUU
.((((.(((((.((((((((((.(((..((((((((...))))))..))..)))....))))..))))))))))))))).....--..-...........(((((.......)))))... ( -35.40)
>consensus
GGCCAAGUGCUCGGUUUCGUUUGUACCACCAGUGCGUGACGCAUUCCGGCUGCACUUGAAACUUGAGAUUUCCUCCCCUGGUUUUUCG_CCC____CC_CCCGAUUUU____________
...(((((((.(((..((((((((((.....))))).)))).)..)))...))))))).............................................................. (-19.34 = -19.28 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:32 2006