| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 4,998,041 – 4,998,137 |
| Length | 96 |
| Max. P | 0.724630 |
| Location | 4,998,041 – 4,998,137 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 83.28 |
| Mean single sequence MFE | -26.40 |
| Consensus MFE | -16.14 |
| Energy contribution | -16.37 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.48 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.724630 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4998041 96 - 23771897 UUUCACCUUUAAUCCGCACUUAGUGCUUGGCACACAGAUGGCGG-GAGCACCGCCGUUCCAGUGGCACCACCACAACCACCACCCCCAC---CCACCACA ...............((((...)))).(((......((((((((-.....))))))))...((((.....))))..)))..........---........ ( -23.60) >DroSec_CAF1 218653 99 - 1 UUUCACCUUUAAUCCGCACUUAGUGCUUGGCACACAGAUGGCGG-GAGCACCGCCGUUUCAGUGGCACCACCACAACCACACACCCCACUGCCACCCACA ......................(((..(((((...(((((((((-.....)))))))))..((((.....))))...............)))))..))). ( -29.80) >DroYak_CAF1 226751 96 - 1 UUUCACCUUUAAUCCGCACUUAGUGCCUGGCACACAGAUGGCGGGGAGCACCACCGCUCCACGGGCACCACCACAACCAAGAUUACCAACGCCAGC---- ...............((((...))))(((.....))).(((((.(((((......)))))..((......)).................)))))..---- ( -25.80) >consensus UUUCACCUUUAAUCCGCACUUAGUGCUUGGCACACAGAUGGCGG_GAGCACCGCCGUUCCAGUGGCACCACCACAACCACAAACCCCAC_GCCAACCACA ......................((((((((......((((((((......)))))))))))..)))))................................ (-16.14 = -16.37 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:28 2006