| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 4,996,853 – 4,996,972 |
| Length | 119 |
| Max. P | 0.754634 |
| Location | 4,996,853 – 4,996,972 |
|---|---|
| Length | 119 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 94.02 |
| Mean single sequence MFE | -28.18 |
| Consensus MFE | -24.04 |
| Energy contribution | -24.57 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.754634 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4996853 119 - 23771897 CA-CUCGGGCACUAACUGACAUGCUAAAUAUUGCAUUCAUCUUGUGCAUUGUGUCCAUGUGGCAAAUAAUUAUGGCAUUAAUAUUCCUAUGCAAAUAUAUGUGCACAGUGCUUUGUUCGC ..-..((((((.....(((.((((........)))))))......((((((((..((((((.((........))((((..........))))...))))))..))))))))..)))))). ( -30.40) >DroSec_CAF1 217490 119 - 1 CA-CUCGGGCACUAACUGACAUGCUAAAUAUUGUAUACAUCUUGUGCAUUGUGUCCAUGUGGCAAAUAAUUAUGGCAUUAAUAUUCCUAUGCAAAUAUAUGUGCACAGUGCUUUGUUCGC ..-..((((((.........((((........)))).........((((((((..((((((.((........))((((..........))))...))))))..))))))))..)))))). ( -27.10) >DroSim_CAF1 237259 119 - 1 CA-CUCGGGCACUAACUGACAUGCUAAAUAUUGCAUACAUCUUGUGCAUUGUGUCCAUGUGGCAAAUAAUUAUGGCAUUAAUAUUCCUAUGCAAAUAUAUGUGCACAGUGCUUUGUUCGC ..-..((((((.........((((........)))).........((((((((..((((((.((........))((((..........))))...))))))..))))))))..)))))). ( -29.10) >DroEre_CAF1 220756 118 - 1 CA-CUCG-GCACUAACUGACAUGCUAAAUAUUGCAUACAUCUUGUGCAUUGUGUCCGUGUGGCAAAUAAUUAUGGCAUUAAUAUUCCUAUGCAAAUAUAUGUGCACAGUGCUUUGUUCGC .(-(..(-(((((.......((((........)))).......(((((((((((..((((((..((((.(((......))))))).))))))..))))).))))))))))))..)).... ( -27.00) >DroYak_CAF1 225581 119 - 1 CA-CUCGGGCACUAACUGACAUGCUAAAUAUUGCAUACAUCUUGUGCAUUGUGUCCGUGUGGCAAAUAAUUAUGGCAUUAAUAUUCCUAUGCAAAUAUAUGUGCAUAGUGCUUUGUUCGC ((-(.(((((((..((.((.((((........))))...))..)).....))))))).)))((.(((((....((((.........(((((((........)))))))))))))))).)) ( -30.60) >DroAna_CAF1 227557 117 - 1 UAACCAAUACUAUAGCUGACAUGCUAAAUAUUGCAUACAUCUUGUGCAUUGUGUCCAUGUGCCAAAUAAUUAUGGCAUUAAUAUGCCUAUGCAAAUAUAU--GCACAGUCCUUUGUUC-C ....(((.(((.((((......)))).....((((((.((....(((((.((((....((((((........))))))....))))..))))).)).)))--))).)))...)))...-. ( -24.90) >consensus CA_CUCGGGCACUAACUGACAUGCUAAAUAUUGCAUACAUCUUGUGCAUUGUGUCCAUGUGGCAAAUAAUUAUGGCAUUAAUAUUCCUAUGCAAAUAUAUGUGCACAGUGCUUUGUUCGC .....((((((.........((((........)))).........(((((((((.((((((.((........))((((..........))))...)))))).)))))))))..)))))). (-24.04 = -24.57 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:27 2006