| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 527,813 – 527,911 |
| Length | 98 |
| Max. P | 0.613705 |
| Location | 527,813 – 527,911 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 82.53 |
| Mean single sequence MFE | -31.40 |
| Consensus MFE | -22.80 |
| Energy contribution | -23.02 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.613705 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 527813 98 - 23771897 ------CUCUCUCUUUCGGUAUCCUUGAAUGGAGGAAAAGAGAG---------A--GA-GAGAGUGGAGAGAGCAACCGGCGGCGGUUUCUUUGAUGAAUCGACAAACGCUGAUUA ------(((((((((((....(((((.....)))))...)))))---------)--))-)))((((...((((.(((((....))))).))))((....))......))))..... ( -33.20) >DroEre_CAF1 2047 100 - 1 CUCUGUCUCUCUCUUUCGGUAUCCUUGAAUGGAGGAAAAGAGAAGG----------------AGUGGAGAGAGCAACCGGCGGCGGUUUCUUUGAUGAAUCGACAAACGCUGAUUA ((((.(((..(((((((..(.(((((.....))))).)...)))))----------------)).))).))))....(((((.((((((.......)))))).....))))).... ( -32.10) >DroYak_CAF1 2126 110 - 1 ------CUCUCUCGUUCGGUAUCCUUGAAUGGAGGCAAAGAGAACGCAAAUGGAGAGAGGAAAGAGGAGAGAGCAACCGGCGGCGGUUUCUUUGAUGAAUCGACAAACGCUGAUUA ------(((((((((((.((.(((......))).)).....)))).(....))))))))..................(((((.((((((.......)))))).....))))).... ( -28.90) >consensus ______CUCUCUCUUUCGGUAUCCUUGAAUGGAGGAAAAGAGAA_G_______A__GA_GA_AGUGGAGAGAGCAACCGGCGGCGGUUUCUUUGAUGAAUCGACAAACGCUGAUUA ......(((((((((((..(.(((((.....))))).)...)))).....................)))))))....(((((.((((((.......)))))).....))))).... (-22.80 = -23.02 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:24 2006