Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 4,995,709 – 4,995,816 |
Length | 107 |
Max. P | 0.599623 |
Location | 4,995,709 – 4,995,816 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 87.56 |
Mean single sequence MFE | -30.08 |
Consensus MFE | -24.50 |
Energy contribution | -25.26 |
Covariance contribution | 0.76 |
Combinations/Pair | 1.17 |
Mean z-score | -1.48 |
Structure conservation index | 0.81 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.599623 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4995709 107 + 23771897 GGCUUACAGGCACUCUUCCAUU-UUCUUUAGUGCAUCUCAAAGGAUGCCAACUAUCCGGCGGACGGGAGUAGAGUGCUGGUUGCGGAUAUUUAUUCAUUAGCCAUUUG ((((.((.((((((((......-.......(.((((((....))))))).(((.((((.....))))))))))))))).))...((((....))))...))))..... ( -32.40) >DroSec_CAF1 216371 107 + 1 AGUUUUAAGGCACUCUUCCAUU-UUCUUUAGUGCAUCUCAAAGGAUGCCAACUAUCCGGCGGACGGGAGUAGAGUGCUGGUUGCAGAUAUUUAUUCAUUAGCCAUUUG ........((((((((......-.......(.((((((....))))))).(((.((((.....)))))))))))))))(((((..((.......))..)))))..... ( -29.90) >DroSim_CAF1 236112 107 + 1 UGUUUUAAGGCACUCUUCCAUU-UUCUUUAGUGCAUCUCAAAGGAUGCCAACUAUCCGGUGGACGGGAGUAGGGUGCUGGUUGCAGAUAUUUAUUCAUUAGCCAUUUG ........((((((((......-.......(.((((((....))))))).(((.((((.....)))))))))))))))(((((..((.......))..)))))..... ( -29.00) >DroEre_CAF1 219583 103 + 1 AUUUCCAAGACACUAUUCCAUUUUUCUCUAGUGCAUCCGAGAGGAUGCAGACAAUCAGGCGGACGGGU-----GUGCUGGCUGCAGAUAUUUAUUCAUUAGCCAUUUG .......(((((((..(((............(((((((....)))))))(.....)....)))..)))-----)).))(((((..((.......))..)))))..... ( -29.20) >DroYak_CAF1 224399 108 + 1 AGUUUAAAAACACUCUUCCAUUUUUCUUGAGUGCAUCUCAAAGGAUGCCAACUAUCAAGCGGACGGGAGUAGAGUGCUGGCUGCAGAUAUUUAUUCAUUAGCCAUUUG ..........(((((((((..((..(((((..((((((....))))))......)))))..))..)))..)))))).((((((..((.......))..)))))).... ( -29.90) >consensus AGUUUAAAGGCACUCUUCCAUU_UUCUUUAGUGCAUCUCAAAGGAUGCCAACUAUCCGGCGGACGGGAGUAGAGUGCUGGUUGCAGAUAUUUAUUCAUUAGCCAUUUG ........(((((((((((......((.((((((((((....))))))..))))...))......)))..))))))))(((((..((.......))..)))))..... (-24.50 = -25.26 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:26 2006