Locus 1718

Sequence ID 3L_DroMel_CAF1
Location 4,992,158 – 4,992,257
Length 99
Max. P 0.641488
window2649

overview

Window 9

Location 4,992,158 – 4,992,257
Length 99
Sequences 4
Columns 104
Reading direction forward
Mean pairwise identity 95.66
Mean single sequence MFE -29.70
Consensus MFE -26.35
Energy contribution -26.35
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.66
Structure conservation index 0.89
SVM decision value 0.22
SVM RNA-class probability 0.641488
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4992158 99 + 23771897
GGACAAGGCCAUGCGAAUGGCGGCGACCUGUUGUGUUGUUUAAGGAAUUACUUAACAUGGUAAAAGCAUG---GU--GUGUGUGAGUGCUGCUUAUGCAUGUAU
.......((((((((((..(((.(((....))))))..)))......(((((......)))))..)))))---))--(((((((((.....))))))))).... ( -29.80)
>DroSec_CAF1 212794 104 + 1
GGACAAGGCCAUGCGAAUGGCGGCGACCUGUUGUGUUGUUUAAGGAAUUACUUAACAUGGUAAAAGCAUGUGUGUGUGUGUGUGAGUGCUGCUUAUGCAUGUAU
..(((..(((((....))))).((.((((((((.((.((((...)))).)).))))).)))....)).)))..(((..((((((((.....))))))))..))) ( -29.30)
>DroSim_CAF1 232541 102 + 1
GGACAAGGCCAUGCGAAUGGCGGCGACCUGUUGUGUUGUUUAAGGAAUUACUUAACAUGGUAAAAGCAUGUGUGU--GUGUGUGAGUGCUGCUUAUGCAUGUAU
..(((..(((((....))))).((.((((((((.((.((((...)))).)).))))).)))....)).)))(((.--.((((((((.....))))))))..))) ( -29.30)
>DroEre_CAF1 216116 104 + 1
GGGCAAGGCCAUGCGAAUGGCGGCGACCUGUUGUGUUGUUUAAGGAAUUACUUAACAUGGUAAAAGCAUGGGAAUGUGUGUGUGAGUGCUGCUUAUGCAUGUAU
........(((((((((..(((.(((....))))))..)))......(((((......)))))..))))))..(((..((((((((.....))))))))..))) ( -30.40)
>consensus
GGACAAGGCCAUGCGAAUGGCGGCGACCUGUUGUGUUGUUUAAGGAAUUACUUAACAUGGUAAAAGCAUGUGUGU__GUGUGUGAGUGCUGCUUAUGCAUGUAU
.........((((((...(((((((((((((((.((.((((...)))).)).))))).)))....((((........)))).....)))))))..))))))... (-26.35 = -26.35 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:25 2006