Locus 1716

Sequence ID 3L_DroMel_CAF1
Location 4,990,023 – 4,990,120
Length 97
Max. P 0.591910
window2646

overview

Window 6

Location 4,990,023 – 4,990,120
Length 97
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 96.49
Mean single sequence MFE -27.58
Consensus MFE -24.04
Energy contribution -24.68
Covariance contribution 0.64
Combinations/Pair 1.03
Mean z-score -1.31
Structure conservation index 0.87
SVM decision value 0.12
SVM RNA-class probability 0.591910
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4990023 97 + 23771897
UGCGUACGUGCGGCUCGGCAAAAUUAAAUGCACAUCGGAAUUUAUGGGUCUCGGACAAAAUGACAAAUAGUGCGUGGCUGAUCCGCACAAGACACAC
((.((..((((((.(((((........((((((.(((..(((....)))..))).(.....).......)))))).))))).))))))...)).)). ( -28.60)
>DroSec_CAF1 210608 97 + 1
UGCGUACGUGCGGCUCGGCAAAAUUAAAUGCACAUCGGAAUUUAUGGGUUCCGGGCAAAAUGACAAAUAGUGCGUGGCUGAUCCGCACAAGACACAC
((.((..((((((.(((((........((((((.((((((((....)))))))).(.....).......)))))).))))).))))))...)).)). ( -33.80)
>DroSim_CAF1 230361 97 + 1
UGCGUACGUGCGGCUCGGCAAAAUUAAAUGCACAUCGGAAUUUAUGGGUCCCGGGCAAAAUGACAAAUAGUGCGUGGCUGAUCCGCACAAGACACAC
((.((..((((((.(((((........((((((.((((.(((....))).)))).(.....).......)))))).))))).))))))...)).)). ( -29.40)
>DroEre_CAF1 214004 97 + 1
UGCGUACGUGCGACUCGACAAAAUUAAAUGCACAUCGGAAUUUAUGGGUACCGGGCAAAAUGACAAAUAGUGCGUGGCUGAUCCACACAAGACGCAC
(((((..(((((................)))))...........(((((.(((.(((..((.....))..))).)))...)))))......))))). ( -22.89)
>DroYak_CAF1 218526 97 + 1
UGCGUACGUGCGGCUCGACAAAAUUAAAUGCACAUCGGAAUUUAUGGGUACCGGGCAAAAUGACAAAUAGUGCGUGGCUGAUCCGCACAAGACACAC
((.((..((((((.(((...........(((.(((........))).)))(((.(((..((.....))..))).))).))).))))))...)).)). ( -23.20)
>consensus
UGCGUACGUGCGGCUCGGCAAAAUUAAAUGCACAUCGGAAUUUAUGGGUACCGGGCAAAAUGACAAAUAGUGCGUGGCUGAUCCGCACAAGACACAC
((.((..((((((.(((((........((((((.((((.(((....))).)))).(.....).......)))))).))))).))))))...)).)). (-24.04 = -24.68 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:22 2006