Locus 1713

Sequence ID 3L_DroMel_CAF1
Location 4,985,559 – 4,985,649
Length 90
Max. P 0.833190
window2642

overview

Window 2

Location 4,985,559 – 4,985,649
Length 90
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 94.16
Mean single sequence MFE -22.08
Consensus MFE -19.42
Energy contribution -19.82
Covariance contribution 0.40
Combinations/Pair 1.08
Mean z-score -1.39
Structure conservation index 0.88
SVM decision value 0.72
SVM RNA-class probability 0.833190
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4985559 90 - 23771897
AAGGCACAUA----UGGAUGUGUCAGGUAGAAGGCGGAUGC--CAAAACACUUGACGUUCGCUUUAUGCAAAUUAGUUUCAAAUAACAAGGACACC
..(((((((.----...)))))))..(((.((((((((((.--(((.....))).)))))))))).)))......(((......)))......... ( -24.80)
>DroSec_CAF1 206163 90 - 1
GAGGCACAUA----UGGAUGUGUCAGGUAGAAGGCGGAUGC--CAAAACACUUGACGUUCGCUUUAUGCAAAUUAGUUUCAAAUAACAAGGACACC
..(((((((.----...)))))))..(((.((((((((((.--(((.....))).)))))))))).)))......(((......)))......... ( -24.80)
>DroSim_CAF1 225583 90 - 1
GAGGCACAUA----UGGAUGUGUCAGGUAGAAGGCGGAUGC--CAAAACACUUGACGUUCGCUUUAUGCAAAUUAGUUUCAAAUAACAAGGACACC
..(((((((.----...)))))))..(((.((((((((((.--(((.....))).)))))))))).)))......(((......)))......... ( -24.80)
>DroEre_CAF1 209508 94 - 1
AAGGCACAUAUGUAUGGAUGUAUCAGGUAGAAGGUGGAAGC--CAAAACACUUGACGUUCGCUUUAUGCAAAUUAGUUUCAAAUAACAAGGACACC
(((((((....))..(((((..((((((....(((....))--).....))))))))))))))))..........(((......)))......... ( -14.70)
>DroYak_CAF1 213872 92 - 1
AAGGCACAUA----UGGAUGUGUCAGGUAGGAGGUGGAAACAGCAAAACACUUGACGUUCGCUUUAUGCAAAUUAGUUUCAAAUAACAAGGACACC
..(((((((.----...))))))).(((....(.((....)).)............((((((.....))......(((......)))..))))))) ( -21.30)
>consensus
AAGGCACAUA____UGGAUGUGUCAGGUAGAAGGCGGAUGC__CAAAACACUUGACGUUCGCUUUAUGCAAAUUAGUUUCAAAUAACAAGGACACC
..(((((((........)))))))..(((.((((((((((...(((.....))).)))))))))).)))......(((......)))......... (-19.42 = -19.82 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:18 2006