Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 4,984,751 – 4,984,848 |
Length | 97 |
Max. P | 0.907316 |
Location | 4,984,751 – 4,984,848 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 94.63 |
Mean single sequence MFE | -27.10 |
Consensus MFE | -25.00 |
Energy contribution | -25.00 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.35 |
Structure conservation index | 0.92 |
SVM decision value | 1.05 |
SVM RNA-class probability | 0.907316 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4984751 97 - 23771897 CGCAUACA--UCGUUGUCGCAUGAAAAGUGGAAAAUCGGGUUAACAGUGCCAAAAACGCAGACAAUGGCA-ACGUUGACUGCGGUUCGCGAUAAAUCAGC ........--...(((((((..................(((.......))).....(((((.(((((...-.))))).)))))....)))))))...... ( -27.90) >DroSec_CAF1 205363 97 - 1 CGCAUACA--UCGUUGUCGCAUGAAAAGUGGAAAAUCGGGUUAACAGUGCCAAAAACGCAGACAAUGGCA-ACGUUGACUGCGGUUCGCGAUAAAUCAGC ........--...(((((((..................(((.......))).....(((((.(((((...-.))))).)))))....)))))))...... ( -27.90) >DroSim_CAF1 224779 97 - 1 CGCAUACA--UCGUUGUCGCAUGAAAAGUGGAAAAUCGGGUUAACAGUGCCAAAAACGCAGACAAUGGCA-ACGUUGACUGCGGUUCGCGAUAAAUCAGC ........--...(((((((..................(((.......))).....(((((.(((((...-.))))).)))))....)))))))...... ( -27.90) >DroEre_CAF1 208694 97 - 1 CACAUACA--UCGUUGUCGCAUGAAAAGUGGAAAAUCGGGUUAGCAGUGCCAAAAACGCAGACAAUGGCA-GCGUUGACUGCGGUUCGCGAUAAAUCAGC ........--...(((((((..................(((.......))).....(((((.(((((...-.))))).)))))....)))))))...... ( -24.40) >DroYak_CAF1 213020 97 - 1 CACAUACA--UCGUUGUCGCAUGAAAAGUGGAAAAUCGGGUUAGCAGUGCCAAAAACGCAGACAAUGGCA-GCGUUGACUGCGGUUCGCGAUAAAUCAGC ........--...(((((((..................(((.......))).....(((((.(((((...-.))))).)))))....)))))))...... ( -24.40) >DroAna_CAF1 215129 100 - 1 UGUGUGUGUCGCGUUGUCGCAUGAAAAGUGGAAAAUCGGGUUAACAGUGCCAAAAUCGCAGACAAUGGCAAACGUUGACUGCGGUUCGCGAUAAAUCAGC ..((..((((((((((.(((.((..((.(.(.....).).))..))))).)))((((((((.(((((.....))))).)))))))))))))))...)).. ( -30.10) >consensus CGCAUACA__UCGUUGUCGCAUGAAAAGUGGAAAAUCGGGUUAACAGUGCCAAAAACGCAGACAAUGGCA_ACGUUGACUGCGGUUCGCGAUAAAUCAGC .............(((((((..................(((.......))).....(((((.(((((.....))))).)))))....)))))))...... (-25.00 = -25.00 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:17 2006