Locus 1711

Sequence ID 3L_DroMel_CAF1
Location 4,983,814 – 4,983,913
Length 99
Max. P 0.525267
window2640

overview

Window 0

Location 4,983,814 – 4,983,913
Length 99
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 87.63
Mean single sequence MFE -26.27
Consensus MFE -20.31
Energy contribution -19.98
Covariance contribution -0.33
Combinations/Pair 1.07
Mean z-score -2.26
Structure conservation index 0.77
SVM decision value -0.02
SVM RNA-class probability 0.525267
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4983814 99 - 23771897
------AUUUUCAUA--UUCAUGCUCGUAUAUCAAAAACCAUU--UCAAAAUGGCUGUGCGUC----------GCUUUUGCGGUGGC-AAAAGCAUAAUAAAAUGCAGAUAACGGCAAUC
------.........--....(((.(((.((((.....(((((--....)))))...(((((.----------((((((((....))-))))))........)))))))))))))))... ( -24.80)
>DroPse_CAF1 260060 120 - 1
UUUCAUAUUUUCAUAUUUUCAUGCUCGUAUAUCAAAAAGCAUUUUUCAAAAUGUCUGUGCAUCGGUUGUCGGUGCUUUUGCGGUGGCCAAAAGCAUAAUAAAAUGCAGAUAACGGCAAUC
.....................(((.(((.((((.....((((((....))))))...(((((...((((..((((((((((....).))))))))).)))).)))))))))))))))... ( -27.30)
>DroSec_CAF1 204422 99 - 1
------AUUUUCAUA--UUCAUGCUCGUAUAUCAAAAGCCAUU--UCAAAAUGGCUGUGCGUC----------GCUUUUGCGGUGGA-AAAAGCAUAAUAAAAUGCAGAUAACGGCAAUC
------.........--....(((.(((.((((...(((((((--....)))))))...(..(----------((....)))..)..-....((((......)))).))))))))))... ( -26.80)
>DroSim_CAF1 223849 99 - 1
------AUUUUCAUA--UUCAUGCUCGUAUAUCAAAAACCAUU--UCAAAAUGGCUGUGCGUC----------GCUUUUGCGGUGGC-ACAAGCAUAAUAAAAUGCAGAUAACGGCAAUC
------.........--....(((.(((.((((.....(((((--....))))).(((((..(----------((....)))..).)-))).((((......)))).))))))))))... ( -26.60)
>DroAna_CAF1 214368 99 - 1
------AUUUUCAUA--UUCAUGCUCGUAUAUCAAAAACCAUU--UCAAAAUGGCUGUGCGUC----------GCUUUUGCGGUGGC-AAAAGCAUAAUAAAAUGCAGAUAACGGCAAUC
------.........--....(((.(((.((((.....(((((--....)))))...(((((.----------((((((((....))-))))))........)))))))))))))))... ( -24.80)
>DroPer_CAF1 249942 120 - 1
UUUCAUAUUUUCAUAUUUUCAUGCUCGUAUAUCAAAAAGCAUUUUUCAAAAUGUCUGUGCAUCGGUUGUCGGUGCUUUUGCGGUGGCCAAAAGCAUAAUAAAAUGCAGAUAACGGCAAUC
.....................(((.(((.((((.....((((((....))))))...(((((...((((..((((((((((....).))))))))).)))).)))))))))))))))... ( -27.30)
>consensus
______AUUUUCAUA__UUCAUGCUCGUAUAUCAAAAACCAUU__UCAAAAUGGCUGUGCGUC__________GCUUUUGCGGUGGC_AAAAGCAUAAUAAAAUGCAGAUAACGGCAAUC
.....................(((.(((.((((.....(((((......)))))...(((((...........((((((((....)).))))))........)))))))))))))))... (-20.31 = -19.98 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:16 2006