Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 4,981,731 – 4,981,835 |
Length | 104 |
Max. P | 0.837266 |
Location | 4,981,731 – 4,981,835 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 74.85 |
Mean single sequence MFE | -29.02 |
Consensus MFE | -17.16 |
Energy contribution | -19.60 |
Covariance contribution | 2.44 |
Combinations/Pair | 1.12 |
Mean z-score | -1.89 |
Structure conservation index | 0.59 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.837266 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4981731 104 + 23771897 AAAUGUUGGCAAUGCAAAAACUUGUAUCGUCGCAA-AGGGCGAAAA---AUGCAGGCCGC------AGACAAACGCAUA--GAAAAGCCCACAAAGUGGGUGCCAACAGGAUCGGC ...(((((((.((((.....(((((((..((((..-...))))...---)))))))..(.------...)....)))).--.....((((((...)))))))))))))........ ( -33.60) >DroPse_CAF1 258176 116 + 1 AAAUGUGGGCAAUGCAAAAGCUUGUAUCGUCGCAAAAGGGCGGAAAUAUUUGCAGGCCGCACAGACAGACAGACGCUGACAGCAAAGGGCGCGCGGGGAGGGCAGGGGGGAGGGGA ...(((((((..(((((......((((..((((......))))..))))))))).))).))))..........(.((..(.((.....))((.(.....).)).....)..)).). ( -28.00) >DroEre_CAF1 205627 91 + 1 AAAUGUGGGAAAUGCAAGAACUUGUAUCGUCGCAA-AGGGCGAAAA---AUGCAGGCCGC------AGACAAA---------------CCACCAAGUGGGUGCCAACAGGAUCGGG ....((((....(((.....(((((((..((((..-...))))...---)))))))..))------)......---------------))))......(((.((....)))))... ( -21.40) >DroYak_CAF1 209819 100 + 1 AAAUGUUGGCAAUGCAAAAACUUGUAUCGUCGCAA-AGGGCGAAAA---AUGCAGGCCGC------AGACAAACGCAGA--GAAAAGCCCACAAAGUGGGUGCCAACAGGAU---- ...(((((((..(((.....(((((((..((((..-...))))...---)))))))..))------)............--.....((((((...)))))))))))))....---- ( -33.10) >consensus AAAUGUGGGCAAUGCAAAAACUUGUAUCGUCGCAA_AGGGCGAAAA___AUGCAGGCCGC______AGACAAACGCAGA__GAAAAGCCCACAAAGUGGGUGCCAACAGGAUCGG_ ...(((((((..........(((((((..((((......))))......)))))))..............................((((((...)))))))))))))........ (-17.16 = -19.60 + 2.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:15 2006