Locus 1707

Sequence ID 3L_DroMel_CAF1
Location 4,972,018 – 4,972,112
Length 94
Max. P 0.682240
window2635

overview

Window 5

Location 4,972,018 – 4,972,112
Length 94
Sequences 5
Columns 94
Reading direction forward
Mean pairwise identity 90.21
Mean single sequence MFE -22.62
Consensus MFE -17.24
Energy contribution -18.08
Covariance contribution 0.84
Combinations/Pair 1.04
Mean z-score -1.70
Structure conservation index 0.76
SVM decision value 0.31
SVM RNA-class probability 0.682240
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4972018 94 + 23771897
CUUUUGUAAUGGUUGCUUAAAGCUUAUAAAUUAUAAAUUUGGCUCUCUGCACUUGAGAUAAUUUUUCGUCGAGCAGUUGGCAAAGCUUAGGCAU
.............(((((((.((((.(((((.....)))))(((..((((...(((((.....)))))....))))..))).))))))))))). ( -23.00)
>DroSec_CAF1 192677 94 + 1
CUUUUUUAAUGGUUGCUUAAAGCUAAUAAAUUACAAAUUUGGCUCUCUGCACUUGAGAUAAUUUUUCGUCGAGCAGUUGGCAAAGCUUAGGCAU
.............(((((((.(((..(((((.....)))))(((..((((...(((((.....)))))....))))..)))..)))))))))). ( -22.10)
>DroSim_CAF1 211945 94 + 1
CUUUUCUAAUGGUUGCUUAAAGCUAAUAAAUUACAAAUUUGGCUCUCUGCGCUUGAGAUAAUUUUUCGUCGAGCAGUUGGCAAAGCUUAGGCAU
.............(((((((.(((..(((((.....)))))(((..((((...(((((.....)))))....))))..)))..)))))))))). ( -23.20)
>DroEre_CAF1 193781 93 + 1
CUUUU-UCAGUCUGGCUUAAAUCGAGUAAAUUACAAAUUUGGCUCUCUGCACUUCAGAUAAUUUUUCGUCGAGCAGUUGGCAAAGCCUAGGCAU
.....-...(((((((((....(((((.........)))))(((..((((...((.(((........)))))))))..))).))))).)))).. ( -21.90)
>DroYak_CAF1 199806 94 + 1
CAUUUGCCAUUCCGGCUUAAACCUAAUAAAUUACAAAUUUGGCUCUCUGCACUCGAGAUAAUUUUUCGUCGAGCAGUUGGCAGAGCUUAGGCAU
....((((.....(((((........(((((.....)))))(((..((((...(((((.....)))))....))))..))).)))))..)))). ( -22.90)
>consensus
CUUUUGUAAUGGUUGCUUAAAGCUAAUAAAUUACAAAUUUGGCUCUCUGCACUUGAGAUAAUUUUUCGUCGAGCAGUUGGCAAAGCUUAGGCAU
..............((((((.(((..(((((.....)))))(((..((((...(((((.....)))))....))))..)))..))))))))).. (-17.24 = -18.08 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:11 2006