Locus 1705

Sequence ID 3L_DroMel_CAF1
Location 4,969,393 – 4,969,495
Length 102
Max. P 0.908787
window2631

overview

Window 1

Location 4,969,393 – 4,969,495
Length 102
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 88.93
Mean single sequence MFE -30.38
Consensus MFE -25.37
Energy contribution -25.53
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -2.51
Structure conservation index 0.83
SVM decision value 1.06
SVM RNA-class probability 0.908787
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4969393 102 + 23771897
---------A-AAAACCCAUAUCAAGUAACUGAGCCGCGCCAAGCGGCUG-CAUAGUGAAAAUGCAACUGUGCGGAAAACUGUGCGAACAUUUUCAUUUUCAAUGCAG------CUCUU-
---------.-.............(((.....((((((.....))))))(-(((((((((((((....((..(((....)))..))..))))))))))....)))).)------))...- ( -29.90)
>DroPse_CAF1 244412 118 + 1
GGAGGCACAA-AAAAC-UGUAUCAAGUAACUGAGCCGCGCCAAGCGGCAACCAUAGUGAAAAUGCAACUGUGCGGAAAACUGUGCGAACAUUUUCAUUUUCAAUGCAGCUACAGCUCUUG
.((((((((.-.....-))).....(((.(((.(((((.....)))))......((((((((((....((..(((....)))..))..)))))))))).......))).))).)).))). ( -34.10)
>DroEre_CAF1 191103 101 + 1
---------A-AAAAC-CAUAUCAAGUAACUGAGCCGCGCCAAGCGGCUG-CAUAGUGAAAAUGCAACUGUGCGGAAAACUGUGCGAACAUUUUCAUUUUCAAUGCAG------CUCUU-
---------.-.....-.......(((.....((((((.....))))))(-(((((((((((((....((..(((....)))..))..))))))))))....)))).)------))...- ( -29.90)
>DroYak_CAF1 196950 101 + 1
---------A-AAAAC-CAUAUCAAGUAACUGAGCCGCGCCAAGCGGCUG-CAUAGUGAAAAUGCAACUGUGCGGAAAACUGUGCGAACAUUUUCAUUUUCAAUGCAG------CUCUU-
---------.-.....-.......(((.....((((((.....))))))(-(((((((((((((....((..(((....)))..))..))))))))))....)))).)------))...- ( -29.90)
>DroAna_CAF1 198559 101 + 1
---------G-AAAUC-UGUAUCAAGUAACUGAGCCGCGCCAAGCGACAG-CAUAGUGAAAAUGCAACUGUGCGGAAAACUGUGCGAACAUUUUCAUUUUCAAUGCAG------CUCUU-
---------.-.....-..............(((((((.....)))...(-(((((((((((((....((..(((....)))..))..))))))))))....)))).)------)))..- ( -27.20)
>DroPer_CAF1 229297 115 + 1
----GCACAAAAAAAC-UGUAUCAAGUAACUGAGCCGCGCCAAGCGGCAACCAUAGUGAAAAUGCAACUGUGCGGAAAACUGUGCGAACAUUUUCAUUUUCAAUGCAGCUACAGCUCUUG
----(((((.......-))).....(((.(((.(((((.....)))))......((((((((((....((..(((....)))..))..)))))))))).......))).))).))..... ( -31.30)
>consensus
_________A_AAAAC_CAUAUCAAGUAACUGAGCCGCGCCAAGCGGCAG_CAUAGUGAAAAUGCAACUGUGCGGAAAACUGUGCGAACAUUUUCAUUUUCAAUGCAG______CUCUU_
.........................(((..((((((((.....)))))......((((((((((....((..(((....)))..))..)))))))))).))).))).............. (-25.37 = -25.53 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:07 2006