Locus 1704

Sequence ID 3L_DroMel_CAF1
Location 4,967,027 – 4,967,122
Length 95
Max. P 0.630195
window2630

overview

Window 0

Location 4,967,027 – 4,967,122
Length 95
Sequences 3
Columns 95
Reading direction forward
Mean pairwise identity 91.55
Mean single sequence MFE -32.23
Consensus MFE -22.82
Energy contribution -23.60
Covariance contribution 0.78
Combinations/Pair 1.04
Mean z-score -2.96
Structure conservation index 0.71
SVM decision value 0.20
SVM RNA-class probability 0.630195
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4967027 95 + 23771897
GAGGUAGAGAACAAAUGGUACAAGAAAAUGGGUCUACUACUUUUUUUGCAAGUGCAGCCGCCGAAAGGCGGACAAAGCCUGCCAUUGCCACGUAA
..((((........(((((.(((((((((((.....))).))))))))..((.((..(((((....))))).....)))))))))))))...... ( -28.40)
>DroSec_CAF1 187776 94 + 1
GAAGUAGAUAACAAAUGCUACCAGAAACUGGGUCUACUUCUU-UUCUGCAAGUGCAGCCGCCGAAAGGCGGACAAAGGCUGCCAUUGCCACGUAA
(((((((((..(....)...((((...)))))))))))))..-..((((....))))(((((....))))).....(((.......)))...... ( -35.00)
>DroSim_CAF1 206994 94 + 1
GAGGCAGAGAACAAAUGGUACAAGAAACUGGGUCUACUUGUU-UUCUGCAAGUGCAGCCGCCGAAUGGCGGACAAAGGCUGCCAUUGCCACGUAA
...(((((((((((.(((..((......))...))).)))))-))))))...(((.((((((....))))).)...(((.......)))..))). ( -33.30)
>consensus
GAGGUAGAGAACAAAUGGUACAAGAAACUGGGUCUACUUCUU_UUCUGCAAGUGCAGCCGCCGAAAGGCGGACAAAGGCUGCCAUUGCCACGUAA
((((((((...((...............))..)))))))).......((((..(((((((((....))))).......))))..))))....... (-22.82 = -23.60 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:06 2006