Locus 1703

Sequence ID 3L_DroMel_CAF1
Location 4,966,488 – 4,966,598
Length 110
Max. P 0.987759
window2629

overview

Window 9

Location 4,966,488 – 4,966,598
Length 110
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 92.12
Mean single sequence MFE -30.12
Consensus MFE -26.14
Energy contribution -25.78
Covariance contribution -0.36
Combinations/Pair 1.24
Mean z-score -2.61
Structure conservation index 0.87
SVM decision value 2.09
SVM RNA-class probability 0.987759
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4966488 110 - 23771897
AUUAAACUGGGUGGAAAACUUUGUUUACUCCUUUUGCCAUGCACGUGGCAGAGAAAUGCAACAUAAGUAAGAGUGUGUAAAACCAAUUAUGAACAUGUUUUUCACAGACU
..........(((((((((..((((((....(((((((((....)))))))))...((((.(((........)))))))..........)))))).)))))))))..... ( -28.70)
>DroSec_CAF1 187218 110 - 1
AUUAAACUGGGUGGAAGACUUUGUUUACUCCUUUUGCCAUGCACGUGGCAGAGGAAUGCAACAUAAGUAAGAGUGUGUAAAACCAAUUAUGAACAUGUUUUUCACAGACU
..........(((((((((..((((((.((((((.(((((....))))))))))).((((.(((........)))))))..........)))))).)))))))))..... ( -32.20)
>DroSim_CAF1 206441 110 - 1
AUUAAACUGGGUGGAAAACUUUGUUUACUCCUUUUGCCAUGCACGUGGCAGAGGAAUGCAACAUAAGUAAGAGUGUGUAAAACCAAUUAUGAACAUGUUUUUCACAGACU
..........(((((((((..((((((.((((((.(((((....))))))))))).((((.(((........)))))))..........)))))).)))))))))..... ( -32.10)
>DroEre_CAF1 188293 110 - 1
AUUAAACUGGGUGGAAAACUUUGUUUACUUCUUUUGCCGUGCACGUGGCAGGGAAAUGCAACAUAAGUAAGAGUGUGUAAAACCAAUUAUGAACAUGUUUUUCACAGACU
..........(((((((((..((((((.((((((.((((......)))))))))).((((.(((........)))))))..........)))))).)))))))))..... ( -26.20)
>DroYak_CAF1 194040 110 - 1
AUUAAACUGGGUGGAAAACUUUGCUUACUUCGUUUGCCAUGCACGUGGCAGAGAAAUGCAACAUAAGUAAGAGUGUGUAAAACCAAUUAUGAACAUGUUUUCCACAGACU
..........(((((((((.((((....(((.((((((((....)))))))))))..))))(((((....(.((.......)))..))))).....)))))))))..... ( -29.80)
>DroAna_CAF1 195666 110 - 1
AUUAAACUGGGUUGAAAACAUUGUUUGGCUGUUUUUGCAUGCACAUGGCAGAAAAGUGCAACAGGAGUAAGUGUGUGUAAAACCAAUUAUGAACAUGUUUUCAACAGGCU
......((..(((((((((((.(((((..((.((((((((((((...(((......))).((....))..)))))))))))).))....)))))))))))))))).)).. ( -31.70)
>consensus
AUUAAACUGGGUGGAAAACUUUGUUUACUCCUUUUGCCAUGCACGUGGCAGAGAAAUGCAACAUAAGUAAGAGUGUGUAAAACCAAUUAUGAACAUGUUUUUCACAGACU
..........(((((((((..((((((.(((.((((((((....))))))))))).((((.(((........)))))))..........)))))).)))))))))..... (-26.14 = -25.78 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:05 2006