| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 4,963,017 – 4,963,116 |
| Length | 99 |
| Max. P | 0.532732 |
| Location | 4,963,017 – 4,963,116 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 85.29 |
| Mean single sequence MFE | -32.20 |
| Consensus MFE | -24.23 |
| Energy contribution | -24.22 |
| Covariance contribution | -0.01 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.75 |
| SVM decision value | -0.00 |
| SVM RNA-class probability | 0.532732 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4963017 99 + 23771897 UCUGGGCGAAAUCGGGCCCAACAUGAUAGAUGCCUCCUCAUCCAGAAGUC--AAAAAAAGGAAGUGAAAUCCGGUGGCAGCCAAGGCGUCUGACAGCUCAG .((((((....((((((.............((((.((((.....))....--.......(((.......))))).))))((....))))))))..)))))) ( -28.30) >DroSec_CAF1 183806 98 + 1 UCUGGGCCAAGUCGGGCCCAACAUGAUAGAUGCCUCCUCAGCCAGAAGGC--AAA-AAAGGAAGUAAAAUCCGGUGGCAGCCAAGGCGUCUGACAGCUCAG .((((((...(((((((.............((((.((...(((....)))--...-...(((.......))))).))))((....))))))))).)))))) ( -36.20) >DroSim_CAF1 202983 88 + 1 UCUGGG----------CCCAACAUGAUAGAUGCCUCCUCAGCCAGAAGGC--AAA-AAAGGAAGUAAAAUCCGGUGGCAGCCAAGGCGUCUGACAGCUCAG .(((((----------(......((.(((((((((.....(((....)))--...-...(((.......)))(((....))).))))))))).)))))))) ( -28.90) >DroEre_CAF1 184883 99 + 1 UCUGGGCGAAGUCGGGCCCAACAUGAUAGAUGCCUCCUCAUCCGGA-GGCAGAAA-AAAGGAAGUAAAAUCCGGUGGCAGCCAAGGCGUCUGACAGCUCAG .((((((...(((((((((...........(((((((......)))-))))....-...(((.......)))(((....)))..)).))))))).)))))) ( -39.70) >DroYak_CAF1 190318 98 + 1 UCUGGGCGAAGUCGGGCCCAACAUGAUAGAUGCCUCUUCAGCCAGAAGGC--AAA-AAAGGAAGUGAAAUCCGGUGGCAGCCAAGGCGUCUGACAGCUCGG .((((((...(((((((.............((((.((...(((....)))--...-...(((.......))))).))))((....))))))))).)))))) ( -33.80) >DroAna_CAF1 192178 97 + 1 UUUGGUGCAAACUGAGCCCGACAUGAUAGAUGCCUCCUCAUC-AGCAGUC--AGCACGAAGAAAA-AAAAUUGGUGGCAGCCAAGGCGUCUGACAGCUCAG ...........((((((......((.((((((((........-.((....--.))..........-....(((((....))))))))))))).)))))))) ( -26.30) >consensus UCUGGGCGAAGUCGGGCCCAACAUGAUAGAUGCCUCCUCAGCCAGAAGGC__AAA_AAAGGAAGUAAAAUCCGGUGGCAGCCAAGGCGUCUGACAGCUCAG ..(((((........)))))...((.(((((((((........................(((.......)))(((....))).))))))))).))...... (-24.23 = -24.22 + -0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:00 2006