Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 521,684 – 521,775 |
Length | 91 |
Max. P | 0.942238 |
Location | 521,684 – 521,775 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 94.40 |
Mean single sequence MFE | -18.60 |
Consensus MFE | -16.08 |
Energy contribution | -16.08 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.09 |
Mean z-score | -1.67 |
Structure conservation index | 0.86 |
SVM decision value | 1.32 |
SVM RNA-class probability | 0.942238 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 521684 91 + 23771897 AUCGAACUCGAACAUUAGGAGAUUAGAUAUUGACAAUCAUUCUUUGGGAUUGAUUUUUCGUUUCCUUUAUGAAUUCAAUAAUUUUCAACUU .(((....)))......((((((....((((((...((((.....((((.(((....))).))))...))))..))))))))))))..... ( -15.80) >DroSec_CAF1 101374 91 + 1 AUCGAACUCGAACAUUAGGAGAUUAGAUAUUGACAAUCAUUCUUUGGGAUUGAUUGUCCGUUUCCUUUAUGAAUUCAAUAAUUUUCAACUU .(((....)))......((((((((((.((.((((((((.((.....)).)))))))).)).)).....((....)).))))))))..... ( -19.80) >DroSim_CAF1 105316 91 + 1 AUCGAACUCGAACAUUAGGAGAUUAGAUAUUGACAAUCAUUCUUUCGGAUUGAUUGUCCGUUUCCUUUAUGAAUUCAAUAAUUUUCAACUU .(((....)))......((((((((((.((.((((((((.((.....)).)))))))).)).)).....((....)).))))))))..... ( -19.80) >DroEre_CAF1 105388 91 + 1 AUCGAAAUCGAACAUUAGGAGAUUAGAUAUUGACAAUCAUUCUUUGGGAUUGAUUGUUGGUUUCCUUGAUGAAUUCCAUAAUUUUCAACUU .(((....))).(((((((.((......((..(((((((.((.....)).)))))))..)).))))))))).................... ( -21.40) >DroYak_CAF1 107645 91 + 1 AGCGAAAUCGAGCAUUAGGAGAUUAGAUAUUGACAAUCAUUCUUUGGGAUUGAUUGUUCGCUUCCUUCACGAAUUCAAUAAUUUUCAACUU ...(((.(((.(....((((....((.....((((((((.((.....)).))))))))..)))))).).))).)))............... ( -16.20) >consensus AUCGAACUCGAACAUUAGGAGAUUAGAUAUUGACAAUCAUUCUUUGGGAUUGAUUGUUCGUUUCCUUUAUGAAUUCAAUAAUUUUCAACUU ...(((.(((......(((((((........((((((((.((.....)).)))))))).)))))))...))).)))............... (-16.08 = -16.08 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:17 2006