Locus 17

Sequence ID 3L_DroMel_CAF1
Location 54,772 – 54,863
Length 91
Max. P 0.812663
window21

overview

Window 1

Location 54,772 – 54,863
Length 91
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 76.86
Mean single sequence MFE -17.69
Consensus MFE -8.30
Energy contribution -9.46
Covariance contribution 1.16
Combinations/Pair 1.21
Mean z-score -2.02
Structure conservation index 0.47
SVM decision value 0.65
SVM RNA-class probability 0.812663
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 54772 91 + 23771897
AACGAAAAUCAUCAGCAAAUUGUGUGCACUGCACAAAAUGUAGAAUUUGACACAUCAGGUUUAUAUUGUUUAGAUGAUUUU----UAACAU-A---------CAU
...((((((((((.(((..((((((.....))))))..))).((((((((....))))))))..........)))))))))----).....-.---------... ( -22.30)
>DroSec_CAF1 4590 96 + 1
AACGAAAUUCAUCAGCAAAUUGUGUGCACUGCACAAAAUAUAGAUUUUGAAACAUUAGAUUAA----AUUUAGCUGAUUUU----CAAGAU-ACAUCAAAUACAU
...((((...((((((...((((((.....))))))....(((((((..............))----))))))))))))))----).....-............. ( -16.54)
>DroSim_CAF1 4514 96 + 1
AACGAAAUUCAUCAGCAAAUUGUGUGCACUGCACAAAAUAUAGAAUUUGAAACAUUAGAUUAA----AUUUAGCUGAUUUU----CAAGAU-ACAUCAAAUACAU
...((((...((((((...((((((.....))))))......((((((((.........))))----)))).)))))))))----).....-............. ( -17.70)
>DroEre_CAF1 4598 95 + 1
AACGAAAAUCAUCAGCAAAUUGUGUGCACUGUACAAAAUAAGGAAUUUGAAACAUCAUUUUAAUUUAGUUUAUCUGAUGUUAUCUUCACAU---A-------CGU
...(((...((((((.(((((((((((...)))))........((..(((....)))..))....))))))..)))))).....)))....---.-------... ( -12.00)
>DroYak_CAF1 4579 94 + 1
AACGAAAAUCAUCAGCAAAUUGUGUGCACUGCACAAAAUGAGGAAUGUUAAAUAUCAUUUAAAUGUAGUUUAUCUGAUUUU----UAACAUGAUA-------UUU
.......(((.((..((..((((((.....))))))..))..))((((((((.((((..(((((...)))))..)))).))----))))))))).-------... ( -19.90)
>consensus
AACGAAAAUCAUCAGCAAAUUGUGUGCACUGCACAAAAUAUAGAAUUUGAAACAUCAGAUUAAU_U_GUUUAGCUGAUUUU____UAACAU_A_A_______CAU
..........((((((...((((((.....)))))).......(((((((....)))))))...........))))))........................... ( -8.30 =  -9.46 +   1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:29:58 2006