Locus 1698

Sequence ID 3L_DroMel_CAF1
Location 4,954,550 – 4,954,640
Length 90
Max. P 0.995473
window2620

overview

Window 0

Location 4,954,550 – 4,954,640
Length 90
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 85.06
Mean single sequence MFE -36.34
Consensus MFE -25.62
Energy contribution -25.66
Covariance contribution 0.04
Combinations/Pair 1.04
Mean z-score -3.75
Structure conservation index 0.71
SVM decision value 2.58
SVM RNA-class probability 0.995473
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4954550 90 - 23771897
AUUUUGCAGUUCGUAGUUUGUAGUUUGCGGAUUGCU----------------GGAUUGCUUUGCCUUUCAGCUUGAAAA-------GCGAAAGCUGACAGUGUUAGGGCGAUG
.....((((((((((((((((.....))))))))).----------------))))))).(((((((...(((.(...(-------((....)))..))))...))))))).. ( -33.10)
>DroSec_CAF1 175391 98 - 1
AUUUUGCAGUUCGUAGUUUGUAGUUUGCGGAUUGCUGGAUUGCU--------GGAUUGCUUUGGCUUUCAGCUAGAAAA-------GCGAAAGCUGACAUGGUUAGGGCGAUG
.....((((((((((((((((.....))))))))).))))))).--------..((((((((((((.((((((......-------.....))))))...)))))))))))). ( -35.90)
>DroSim_CAF1 185508 98 - 1
AUUUUGCAGUUCGUAGUUUGUAGUUUGCGGAUUGCUGGAUUGCU--------GGAUUGCUUUGGCUUUCAGCUCGAAAA-------GCGAAAGCUGACAGGGUUAGGGCGAUG
.....((((((((((((((((.....))))))))).))))))).--------..(((((((((((((((((((((....-------.)))..)))))..))))))))))))). ( -37.20)
>DroEre_CAF1 176455 113 - 1
AUUUUGCAGUUCGUAGUUUGUAGUUUGCGGAUUGCUGGGUUGCAGGAUUGUUGGAUUGCUUUGGCUUUCUGCUCGAAAAGCGAAAAGCGAAAGCUGACAGGAAUAGGGCGAUG
.....(((((((((((........)))))))))))...(((((...(((.(((....(((((.(((((.((((.....)))).))))).)))))...))).)))...))))). ( -40.70)
>DroYak_CAF1 181513 106 - 1
AUUUUGCAGUUCGUAGUUUGUAGUUUGCGGAUUGCUGGAUUGCUGGAUUGUUGGGUUGCUUUGGCUUUCUGCUCGAAAA-------GCGAAAGCUGACAGGAAUAGGGCGCUG
(((..((((((((((((((((.....))))))))).)))))))..))).(((..(((.(((..((((((.(((.....)-------))))))))..).)).)))..))).... ( -34.80)
>consensus
AUUUUGCAGUUCGUAGUUUGUAGUUUGCGGAUUGCUGGAUUGCU________GGAUUGCUUUGGCUUUCAGCUCGAAAA_______GCGAAAGCUGACAGGGUUAGGGCGAUG
.....(((((((((((........)))))))))))...................(((((((((..((((.....))))........((....)).........))))))))). (-25.62 = -25.66 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:57 2006