Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 4,953,418 – 4,953,512 |
Length | 94 |
Max. P | 0.815594 |
Location | 4,953,418 – 4,953,512 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 87.35 |
Mean single sequence MFE | -28.53 |
Consensus MFE | -23.58 |
Energy contribution | -23.47 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.09 |
Mean z-score | -2.26 |
Structure conservation index | 0.83 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.815594 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4953418 94 - 23771897 AGACAGGCCGAAA------------GGAUUC-AGAUCCAGUGCCAUU----UGCCUGGAAGCGACAGGAAGCUAUUAAAUCUACAUAAAAUUGUAGAAAUGUGUGGCAUGU .((....((....------------))..))-.......(((((((.----..((((.......))))...........((((((......)))))).....))))))).. ( -25.70) >DroSec_CAF1 174243 94 - 1 AGACAGGCCGAAA------------UGAUUC-AGAUCCAGUGCCAUU----UGCCUGGAAGCGACAGGAAGCUAUUAAAUCUACAUAAAAUUGUAGAAAUGUGUGGCAUGU ..(((.((((...------------......-...(((((.((....----.)))))))(((........)))......((((((......))))))......)))).))) ( -24.30) >DroSim_CAF1 184359 94 - 1 AGACAGGCCGAAA------------GGAUUC-AGAUCCAGUGCCAUU----UGCCUGGAAGCGACAGGAAGCUAUUAAAUCUACAUAAAAUUGUAGAAAUGUGUGGCAUGU .((....((....------------))..))-.......(((((((.----..((((.......))))...........((((((......)))))).....))))))).. ( -25.70) >DroEre_CAF1 175336 93 - 1 AGACAGGCCAAA-------------GGAUUC-GGAUCCAGUGCCAUU----UGCCUGGAAGCGACAGGAAGCUAUUAAAUCUACAUAAAAUUGUAGAAAUGUGUGGCAUGU ..(((.((((..-------------....((-(..(((((.((....----.)))))))..)))...............((((((......))))))......)))).))) ( -25.40) >DroYak_CAF1 180328 106 - 1 AGACAGGCCAAAAGGAUUCGGAUUCGGAUUC-GGAUCCAGUGCCAUU----UGCCUGGAAGCGACAGGAAGCUAUUAAAUCUACAUAAAAUUGUAGAAAUGUGUGGCAUGU .............((((((((((....))))-)))))).(((((((.----..((((.......))))...........((((((......)))))).....))))))).. ( -33.80) >DroAna_CAF1 182692 110 - 1 AGACAAGCAGUU-GGAUCCUGGCUCGGAUCCGGGAUUCAGUGCCAUUUCAGUGCCUGGGAGCGUCAGGAAGCUAUUAAAUCUACAUAAAAUUGUAGAAAUGUGUGGCAUGU .(((..(((.((-(((((((((.......))))))))))))))..(..(((...)))..)..))).....(((((....((((((......)))))).....))))).... ( -36.30) >consensus AGACAGGCCGAAA____________GGAUUC_AGAUCCAGUGCCAUU____UGCCUGGAAGCGACAGGAAGCUAUUAAAUCUACAUAAAAUUGUAGAAAUGUGUGGCAUGU .........................(((((...))))).(((((((.......((((.......))))...........((((((......)))))).....))))))).. (-23.58 = -23.47 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:52 2006