| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 4,951,367 – 4,951,492 |
| Length | 125 |
| Max. P | 0.547455 |
| Location | 4,951,367 – 4,951,457 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 81.96 |
| Mean single sequence MFE | -29.43 |
| Consensus MFE | -17.15 |
| Energy contribution | -18.27 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.547455 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4951367 90 - 23771897 G-----GAGUAUAGGGAGAGCCGGGGAAAUGAGGAAAAACUUUUUCCUCGCCUGCCGUAGAUAAAACGUUCUUCUAAAGGACCUCUCUAUGCGUG .-----..((((((((((..((.((.(..((((((((.....))))))))..).)).((((...........))))..))..))))))))))... ( -31.30) >DroSec_CAF1 172325 90 - 1 G-----GAGUGUAGGGAGAGCCGGGGAAAUGAGGAAAAACUUUUUCCUCGCCUGCCGUAGAUAAAACGUUCUUCCAAAGGACCUCUCUAUGCGUG .-----..((((((((((..((..((((..(((((((.....)))))))......(((.......)))...))))...))..))))))))))... ( -31.30) >DroSim_CAF1 182351 90 - 1 G-----GAGUGUAGGGAGAGCCGGGGAAAUGAGGAAAAACUUUUUCCUCGCCUGCCGUAGAUAAAACGUUCUUCCAAAGGACCUGUCUAUGCGUG .-----..(((((((.((..((..((((..(((((((.....)))))))......(((.......)))...))))...))..)).)))))))... ( -27.20) >DroEre_CAF1 173314 95 - 1 GAUUGUGGGUGCGGGGAGGGCCGGGGAAAUGAGGAAAAACUUUUUCCUCGCCUGCCGUAGAUAAAACGUUCUGCGAAAGGACCUCUCUAUGCGUG ........((..(((((((..((((((((.(((......)))))))))))(((..((((((........))))))..))).)))))))..))... ( -36.90) >DroYak_CAF1 178309 84 - 1 -----------CAGAGAUGGCGGGGGAAAUGAGGAAAAACUUUUUCCUCGCCAGCCGUAGAUAAAACGUUCUGCGAAAGGACCUCUCUAUGCGUG -----------.((((((((((((((((..(((......))))))))))))))..((((((........))))))........)))))....... ( -31.40) >DroAna_CAF1 180689 80 - 1 ---------------AAGAUUUGGGGAAAUGGGGAAAAACUUUUUCCUCGCCUUGCGUAGAUAAAGCGCCCGAUGAAAGGACCUCGCCGUAUGUG ---------------.......((((....(((((((.....))))))).((((((((.......)))).......)))).)))).......... ( -18.51) >consensus G_____GAGUGUAGGGAGAGCCGGGGAAAUGAGGAAAAACUUUUUCCUCGCCUGCCGUAGAUAAAACGUUCUUCGAAAGGACCUCUCUAUGCGUG ............((((((((.((((((((.(((......))))))))))).))..............(((((.....)))))))))))....... (-17.15 = -18.27 + 1.12)
| Location | 4,951,388 – 4,951,492 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 75.91 |
| Mean single sequence MFE | -30.29 |
| Consensus MFE | -19.43 |
| Energy contribution | -20.35 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.64 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.513225 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4951388 104 - 23771897 C-GGUUGAGAGGUUUUGCGGAGGGCGGCGCGUGGUAG-----GAGUAUAGGGAGAGCCGGGGAAAUGAGGAAAAACUUUUUCCUCGCCUGCCGUAGAUAAAACGUUCUUC .-....((((((((((((((.(((((((.(.(.(((.-----...))).).)...)))(((((((.(((......)))))))))))))).)))))))....)).))))). ( -33.40) >DroSec_CAF1 172346 104 - 1 C-GGUUGAGAGGUUUUGCGGAGGGCGGUGGGUGGUGG-----GAGUGUAGGGAGAGCCGGGGAAAUGAGGAAAAACUUUUUCCUCGCCUGCCGUAGAUAAAACGUUCUUC .-....((((((((((((.....((((..((((((..-----.............)))(((((((.(((......)))))))))))))..)))).).)))))).))))). ( -32.56) >DroSim_CAF1 182372 104 - 1 C-GGUUGAGAGGUUUUGCGGAGGGUGGUGGGUGGUGG-----GAGUGUAGGGAGAGCCGGGGAAAUGAGGAAAAACUUUUUCCUCGCCUGCCGUAGAUAAAACGUUCUUC .-....((((((((((((.....((((..((((((..-----.............)))(((((((.(((......)))))))))))))..)))).).)))))).))))). ( -27.76) >DroEre_CAF1 173335 108 - 1 C-GGUUGAGAGGUUUUGCGGG-GGCCGUGGGUUGUGGAUUGUGGGUGCGGGGAGGGCCGGGGAAAUGAGGAAAAACUUUUUCCUCGCCUGCCGUAGAUAAAACGUUCUGC .-.....(((((((((((...-..(((..(........)..))).(((((...((((.(((((((.(((......)))))))))))))).)))))).)))))).)))).. ( -33.00) >DroYak_CAF1 178330 82 - 1 C-GGUUGAGAGGUUUUGCGG---------------------------CAGAGAUGGCGGGGGAAAUGAGGAAAAACUUUUUCCUCGCCAGCCGUAGAUAAAACGUUCUGC .-.....(((((((((((((---------------------------(.....(((((((((((..(((......))))))))))))))))))))))....)).)))).. ( -30.00) >DroAna_CAF1 180710 81 - 1 CAAGUUGAGAGGGUUUCCGCAG-----------------------------AAGAUUUGGGGAAAUGGGGAAAAACUUUUUCCUCGCCUUGCGUAGAUAAAGCGCCCGAU ...((((.((((((((((.(((-----------------------------(...)))).))))))(((((((.....))))))).))))((((.......)))).)))) ( -25.00) >consensus C_GGUUGAGAGGUUUUGCGGAGGGCGGUGGGUGGUGG_____GAGUGUAGGGAGAGCCGGGGAAAUGAGGAAAAACUUUUUCCUCGCCUGCCGUAGAUAAAACGUUCUUC ...(((.......(((((((.((((.........................((....))(((((((.(((......)))))))))))))).)))))))...)))....... (-19.43 = -20.35 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:51 2006