Locus 1694

Sequence ID 3L_DroMel_CAF1
Location 4,950,131 – 4,950,225
Length 94
Max. P 0.942539
window2612

overview

Window 2

Location 4,950,131 – 4,950,225
Length 94
Sequences 4
Columns 100
Reading direction forward
Mean pairwise identity 93.13
Mean single sequence MFE -23.88
Consensus MFE -23.64
Energy contribution -23.20
Covariance contribution -0.44
Combinations/Pair 1.08
Mean z-score -1.78
Structure conservation index 0.99
SVM decision value 1.33
SVM RNA-class probability 0.942539
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4950131 94 + 23771897
UAUAAAUUCGUAUCCUGGUUAUCCUGUGCUCUAUAAACAUGUACGCAUAGCCAGCUGAGGUGCCUAGUUUCAAUUACAUACGCACUUGGCGAAU------
.....((((((...((((((((.(.((((...........))))).))))))))...((((((.((((.......)).)).)))))).))))))------ ( -24.00)
>DroSec_CAF1 171106 94 + 1
UAUAAAUUCGCAUCCUGGUUAUCCUGUGCUCUAUAAACAUGUACGCAUAGCCAGCUGAGGUGCCUAGUUUCAAUUACACACGCACUUGGCGAAU------
.....((((((...((((((((.(.((((...........))))).))))))))...((((((...((.......))....)))))).))))))------ ( -24.80)
>DroSim_CAF1 181131 94 + 1
UAUAAAUUCGCAUCCUGGUUAUCCUGUGCUCUAUAAACAUGUACGCAUAGCCAGCUGAGGUGCCUAGUUUCAAUUACACACGCACUUGGCGAAU------
.....((((((...((((((((.(.((((...........))))).))))))))...((((((...((.......))....)))))).))))))------ ( -24.80)
>DroYak_CAF1 176980 100 + 1
UAUAAAUUCGUGUCCUGGUUAUCCUGUGCUCUAUAAACUCGUACGCAUAACCAGCUGAGGUGCCUAGUUUCAAUUACACACGCACUUGGCGAAGCUCCUU
......(((((...((((((((.(.((((...........))))).))))))))...((((((...((.......))....)))))).)))))....... ( -21.90)
>consensus
UAUAAAUUCGCAUCCUGGUUAUCCUGUGCUCUAUAAACAUGUACGCAUAGCCAGCUGAGGUGCCUAGUUUCAAUUACACACGCACUUGGCGAAU______
......(((((...((((((((.(.((((...........))))).))))))))...((((((...((.......))....)))))).)))))....... (-23.64 = -23.20 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:49 2006