Locus 1693

Sequence ID 3L_DroMel_CAF1
Location 4,949,958 – 4,950,075
Length 117
Max. P 0.541438
window2611

overview

Window 1

Location 4,949,958 – 4,950,075
Length 117
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 89.68
Mean single sequence MFE -34.06
Consensus MFE -27.90
Energy contribution -27.30
Covariance contribution -0.60
Combinations/Pair 1.21
Mean z-score -1.35
Structure conservation index 0.82
SVM decision value 0.02
SVM RNA-class probability 0.541438
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4949958 117 - 23771897
GCGGGGAUU-UCCUGGAUUGAAAUCGUUCCAGGCAGGUGAGUGGGGAGAAGCUCCACGAUGAUGGAAACUAUCGGUUUAAAGUGCCAAAAGGUGGGCAAACAAUUGGAGGGAAAAUGG
.......((-((((.((((((((((((((((..((.....((((((.....))))))..)).))))).....))))))....((((........))))..)))))...)))))).... ( -32.20)
>DroSec_CAF1 170929 117 - 1
GCGGGGAUU-UUCUGGACUGAAACCGUUCCAGGCAGGUGACUGGGGAUAAGCUGCACGUUGAUGGAAACUAUCGGUUUAAAGUGCCAAAAGGUGGGCAAACAAAAGGAGGGAAAAUGG
((((.....-.((((((.((....)).))))))(((....)))........)))).((((((((....).))).........((((........))))...............)))). ( -28.00)
>DroSim_CAF1 180955 117 - 1
GCGGGGAUU-UCCUGGACUGAAACCGUUCCAGGCAGGUGAGUGCGGAUAAGCUCCACGUUGAUGGAAACUAUCGGUUUAAAGUGCCAAAAGGUGGGCAAACAAAAGGAGGGAAAAUGA
.......((-((((...((.(((((((((((..((((((.(.((......)).)))).))).))))).....))))))....((((........))))......))..)))))).... ( -31.10)
>DroEre_CAF1 171851 116 - 1
GCGGGGAUU-UCCCGGACUGAAACCGUUCCAGGCAGCUGAGUGGGGCUAAGCCCCACGAUGAUGGAAACUAUCGGUUUGAAGUGCCAAAAGGUGGGCAAACAGA-AGCAGCAAAAUGG
((.(((...-.)))(((.((....)).)))..)).((((.(((((((...)))))))..(((((....).))))(((((...((((....))))..)))))...-..))))....... ( -40.80)
>DroYak_CAF1 176814 116 - 1
GCGGGGAUUUUUCCGGACUGAAACCGUUCCGGGCGG-UGAGUGGGGAUAAGCCCCACGAUGAUGGAAACCAUCGGUUUAAAGUGCCAAAAGGUGGGCAAACAAA-GCAGGCAAAAUGG
((((((.(((.(((..(((...(((((.....))))-).)))..))).))))))).(((((..(....))))))((((....((((........))))....))-))..))....... ( -38.20)
>consensus
GCGGGGAUU_UCCUGGACUGAAACCGUUCCAGGCAGGUGAGUGGGGAUAAGCUCCACGAUGAUGGAAACUAUCGGUUUAAAGUGCCAAAAGGUGGGCAAACAAA_GGAGGGAAAAUGG
.(((((....)))))((((((.....(((((..((.....((((((.....))))))..)).)))))....)))))).....((((........)))).................... (-27.90 = -27.30 +  -0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:48 2006