| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 4,947,397 – 4,947,487 |
| Length | 90 |
| Max. P | 0.525543 |
| Location | 4,947,397 – 4,947,487 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 94.87 |
| Mean single sequence MFE | -15.32 |
| Consensus MFE | -14.49 |
| Energy contribution | -14.35 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.07 |
| Mean z-score | -0.82 |
| Structure conservation index | 0.95 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.525543 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4947397 90 - 23771897 CAA-AAAAUAACCGCAAAAAUGUAAAUGAAAAUGGCGUGAAAAAUCAGUUUCAUGGUUUUUAUAUCCCUGUUUAUUUGUUGUAAAUGAGCG ...-...(((((.(((....)))(((((((...((.(((((((((((......)))))))).))).))..))))))))))))......... ( -13.70) >DroPse_CAF1 216206 89 - 1 --CAACAACAACCGCAAAAAUGUAAAUGAAAAUGGCGUGAAAAAUCAGUUUCAUGGUUUUUAUAUCCCUGUUUAUUUGUUGUAAAUGAGAG --..(((((....(((....)))(((((((...((.(((((((((((......)))))))).))).))..))))))))))))......... ( -16.50) >DroSec_CAF1 168407 91 - 1 CAACAAAAUAACCGCAAAAAUGUAAAUGAAAAUGGCGUGAAAAAUCAGUUUCAUGGUUUUUAUAUCCCUGUUUAUUUGUUGUAAAUGAGCA (((((((..(((.(((....)))..((((((((..(((((((......)))))))))))))))......)))..))))))).......... ( -14.60) >DroEre_CAF1 169261 90 - 1 C-AAAAAAUAACCACAGAAAUGUAAAUGAAAAUGGCGUGAAAAAUCAGUUUCAUGGUUUUUAUAUCCCUGUUUAUUUGUUGUAAAUGAGCG .-.....(((((.(((....)))(((((((...((.(((((((((((......)))))))).))).))..))))))))))))......... ( -16.20) >DroYak_CAF1 174102 91 - 1 CAAAAAAAAAACCGCAAAAAUGUAAAUGAAAAUGGCGUGAAAAAUCAGUUUCAUGGUUUUUAUAUCCCUGUUUAUUUGUUGUAAAUGAGCA ......((((((((((....)))..((((((.(((..(....).))).)))))))))))))........(((((((((...))))))))). ( -15.30) >DroAna_CAF1 176663 91 - 1 CCAAAAAACAACCGCAAAAAUGUAAAUGAAAAUGGCGUGAAAAAUCAGUUUCAUGGUUUUUAUAUCCCUGUUUAUUUGUUGUAAAUGAGCA .......(((((.(((....)))(((((((...((.(((((((((((......)))))))).))).))..))))))))))))......... ( -15.60) >consensus CAAAAAAAUAACCGCAAAAAUGUAAAUGAAAAUGGCGUGAAAAAUCAGUUUCAUGGUUUUUAUAUCCCUGUUUAUUUGUUGUAAAUGAGCA .......(((((.(((....)))(((((((...((.(((((((((((......)))))))).))).))..))))))))))))......... (-14.49 = -14.35 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:45 2006