| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 4,945,554 – 4,945,669 |
| Length | 115 |
| Max. P | 0.615246 |
| Location | 4,945,554 – 4,945,669 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 77.42 |
| Mean single sequence MFE | -21.47 |
| Consensus MFE | -13.74 |
| Energy contribution | -14.88 |
| Covariance contribution | 1.14 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.615246 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4945554 115 - 23771897 ACUUUGGCAAUAUAAACUCGAGCCUUUUAAGGAAUCUAAUGAUCUAACCAAAUUGGAUCGUUUUCAUGUUCCUGUAUCGCAUUACCGCCUAAAC---AUGUUUA--UGCACCUCGCUCAC ...................((((......((((((..((((((((((.....)))))))))).....)))))).............((.((((.---...))))--.)).....)))).. ( -24.00) >DroSec_CAF1 166573 115 - 1 ACUUUGGCAAUAUAAAUUCGAGGCCCUUAAGGAAUCUAAUGAUCUAACCAAAUUGGAUCGUUUUCAUGUUCCUGUAUCGCAUUACCGCCUAAAU---AUGUUUA--UGCACCUCGCUCAC .....((...(((((((...((((.....((((((..((((((((((.....)))))))))).....))))))(((......))).))))....---..)))))--))..))........ ( -24.20) >DroSim_CAF1 176654 115 - 1 ACUUUGGCAAUAUAAAUUCGAGGCCCUUAAGGAAUCUAAUGAUCUAACCAAAUUGGAUCGUUUUCAUGUUCCUGUAUCGCAUUACCGCCUAAAC---AUGUUUG--UGCACCUCGCUCAC ..................(((((......((((((..((((((((((.....)))))))))).....)))))).............((.((((.---...))))--.)).)))))..... ( -24.30) >DroEre_CAF1 167470 113 - 1 ACUUUGGCAAUAUAAACUCAAACCCUU-UAGGAAUCUAAUGAUCUAACCAAAUUGGAUCGUUUC-CUGUUCCUGUAUCGCAUUACCGCCUAAUC---AUGUUUG--UGCACCUCACCCAC .....((...(((((((..........-(((((((..((((((((((.....))))))))))..-..)))))))....((......))......---..)))))--))..))........ ( -21.90) >DroYak_CAF1 172288 109 - 1 ACUUUAGCCAUAUAAACUCCAGCCCUUUUGGGAAUCUAAUGAUCUAAGCAAAUUGGAUCGUUUCCCUGUUUCUGUAUCGCAUUACCGCCUAAAC---AUGUUUG--UGCACCUC------ ......((.(((((.....((((((....))).....((((((((((.....))))))))))...)))....))))).))......((.((((.---...))))--.)).....------ ( -21.90) >DroAna_CAF1 175294 98 - 1 -----GGCCAAAUAAUUUCCA---------------UAAUGAUCCA--CACAUUAUAUCGUUUUUGUGUUCCGGUAUCAGAUUACGAAGCAAAUACAAUGUUUACCUGUACAGUGUACAC -----..........((((..---------------...(((((((--((((..(......)..)))))...)).))))......))))....((((.(((........))).))))... ( -12.50) >consensus ACUUUGGCAAUAUAAACUCGAGCCCUUUAAGGAAUCUAAUGAUCUAACCAAAUUGGAUCGUUUUCAUGUUCCUGUAUCGCAUUACCGCCUAAAC___AUGUUUA__UGCACCUCGCUCAC ......(((...(((((............((((((..((((((((((.....)))))))))).....))))))(((......)))..............)))))..)))........... (-13.74 = -14.88 + 1.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:44 2006