| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 520,200 – 520,290 |
| Length | 90 |
| Max. P | 0.761312 |
| Location | 520,200 – 520,290 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 80.76 |
| Mean single sequence MFE | -17.62 |
| Consensus MFE | -11.24 |
| Energy contribution | -10.97 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.761312 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 520200 90 + 23771897 ---UA-----AAAUUGAGAGAAAAACCUUUGGAAAAUUAAUGAGCUGCAAACAAUGCGGACAUCGUUAAGGGG-----AAAAGAUUUA--UUC----GGGAAAACAA-AU----- ---..-----.........((((((.((((......(((((((.(((((.....)))))...)))))))....-----.)))).))).--)))----..........-..----- ( -15.40) >DroPse_CAF1 186504 115 + 1 GGGGAGGGAGGGGGGUAGAGAAAACCUUUUGGAAAAUUAAUGAGCUGCAAACAAUGCGGACAUCGUUAGGCGGGAAAAUAAAGAUUUUCUUUUGGGAGGAAAAACUAAAACUACA .........(..(..(((......(((((..((...(((((((.(((((.....)))))...)))))))...(((((((....)))))))))..))))).....)))...)..). ( -24.70) >DroSec_CAF1 99885 89 + 1 ---UA-----AAAUUGAGAGAAAAACCUUUGGAAAAUUAAUGAGCUGCAAACAAUGCGGACAUCGUUAG-AGG-----UAAAGAUUUA--UUC----GGGAAAAUUA-AU----- ---..-----...(((((.(((..(((((........((((((.(((((.....)))))...)))))))-)))-----).....))).--)))----))........-..----- ( -14.00) >DroSim_CAF1 103823 89 + 1 ---UA-----AAAUUGAGAGAAAAACCUUUGGAAAAUUAAUGAGCUGCAAACAAUGCGGACAUCGUUAG-GGG-----GUAAGAUUUA--UUC----GGGAAAACUA-AU----- ---..-----...(((((.(((..(((((.......(((((((.(((((.....)))))...)))))))-)))-----))....))).--)))----))........-..----- ( -14.61) >DroEre_CAF1 103901 91 + 1 ---GA-----AAAUUUAGAGAAAAACCUUUGGAAAAUUAAUGAGCUGCAAACAAUGCGGACAUCGUUAGCUGA-----AAAAGAUAUU--UUC----GGGAAAACUAAAA----- ---..-----...(((((((......)))))))...(((((((.(((((.....)))))...)))))))((((-----(((.....))--)))----))...........----- ( -19.10) >DroYak_CAF1 106135 91 + 1 ---GA-----AAAUGUAGAGAAAAACCUUUGGAAAAUUAAUGAGCUGCAAACAAUGCGGACAUCGUUAGCUGA-----AAAAGAUAUU--UUC----GGGAAAACUAAAA----- ---..-----.................(((((....(((((((.(((((.....)))))...)))))))((((-----(((.....))--)))----)).....))))).----- ( -17.90) >consensus ___GA_____AAAUUGAGAGAAAAACCUUUGGAAAAUUAAUGAGCUGCAAACAAUGCGGACAUCGUUAG_GGG_____AAAAGAUUUA__UUC____GGGAAAACUA_AA_____ ................((((......))))......(((((((.(((((.....)))))...))))))).............................................. (-11.24 = -10.97 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:16 2006