Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 4,942,706 – 4,942,804 |
Length | 98 |
Max. P | 0.747402 |
Location | 4,942,706 – 4,942,804 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 90.79 |
Mean single sequence MFE | -19.20 |
Consensus MFE | -14.70 |
Energy contribution | -15.30 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -1.79 |
Structure conservation index | 0.77 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.747402 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4942706 98 - 23771897 AGAAACAAAAAAAAA-UG----U--------GCAGCAACAGCGGCAAGUGAAAGGGUUAACAAAUGGCAGCCAAAACUUUGGCGCUACUGUCAAAAUAAAUGCGAAGCAAU ...............-((----(--------...(((((((..((..........((((.....)))).(((((....)))))))..)))).........)))...))).. ( -19.90) >DroSec_CAF1 163754 98 - 1 AGAAACAAAAAAAAA-UG----U--------GUAGCAACAGCGGCAAGUGAAAGGGUUAACAAAUGGCAGUCGAAACUUUGGCGCGACUGUCAAAAUAAAUGCGAAGCAAU ...............-((----(--------...(((...((.....))...............(((((((((...(....)..))))))))).......)))...))).. ( -18.70) >DroSim_CAF1 173835 98 - 1 AGAAACAAAAAAAAA-UG----U--------GUAGCAACAGCGGCAAGUGAAAGGGUUAACAAAUGGCAGUCGAAACUUUGGCGCGACUGUCAAAAUAAAUGCGAAGCAAU ...............-((----(--------...(((...((.....))...............(((((((((...(....)..))))))))).......)))...))).. ( -18.70) >DroEre_CAF1 164690 94 - 1 AGAAACAAAAAA----UG----U---------GAGCAACAGCGGCAAGUGAAAGGGUUAACAAAUGGCAGUCGAAACUUUGGCGCGACUGUCAAAAUAAAUGCGAAGCAAU ............----((----(---------..(((...((.....))...............(((((((((...(....)..))))))))).......)))...))).. ( -18.40) >DroYak_CAF1 169358 111 - 1 AGAAACAAAAAAAAAAUAUAUAUAAGUAUUUGUAGUAACAGCGGCAAGUGAAAGGGUUAACAAAUGGCAGUCGAAACUUUGGCGCGACUGUCAAAAUAAAUGCGAAGCAAU .........................((((((((..((((.((.....))......)))).....(((((((((...(....)..)))))))))..))))))))........ ( -20.30) >consensus AGAAACAAAAAAAAA_UG____U________GUAGCAACAGCGGCAAGUGAAAGGGUUAACAAAUGGCAGUCGAAACUUUGGCGCGACUGUCAAAAUAAAUGCGAAGCAAU ........................................((.(((.((..........))...(((((((((...(....)..))))))))).......)))...))... (-14.70 = -15.30 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:43 2006