Locus 1688

Sequence ID 3L_DroMel_CAF1
Location 4,942,235 – 4,942,331
Length 96
Max. P 0.989837
window2605

overview

Window 5

Location 4,942,235 – 4,942,331
Length 96
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 69.21
Mean single sequence MFE -20.48
Consensus MFE -12.94
Energy contribution -14.18
Covariance contribution 1.24
Combinations/Pair 1.05
Mean z-score -2.05
Structure conservation index 0.63
SVM decision value 2.18
SVM RNA-class probability 0.989837
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4942235 96 - 23771897
---------------UUUUGUAGCUGUC-CUUUUAUUUGCAGCUCAGCUAAAUGGAAAGCGACUAACCCUUAGUGGCUCCAUUUCCCUCC----CUCUCUAUUCCCAACAAUCCUA----
---------------..((((((((((.-.........)))))).((..(((((((..((.((((.....)))).)))))))))..))..----.............)))).....---- ( -19.40)
>DroSim_CAF1 173366 100 - 1
---------------UUUUGUAGCUGUC-CUUUUAUUUGCAGCUCAGCUAAAUGGAAAGCGACUAACCCUUAGUGGCUCCAUUCCCCUCCCGUCCUCUCUAUUCCCACCAAUCCUA----
---------------..(((.((((((.-.........)))))))))...((((((..((.((((.....)))).)))))))).................................---- ( -18.30)
>DroEre_CAF1 164266 80 - 1
---------------UUUUGUAGCUGUC-GUUUUAUUUGCAGCUCAGCUAAAUGGAAGGCGACUAACCCUUAGUGGCUCCAUUCCCAC--------------------CAAUCCCA----
---------------..(((.((((((.-(......).)))))))))...((((((..((.((((.....)))).)))))))).....--------------------........---- ( -18.80)
>DroYak_CAF1 168918 90 - 1
---------------UUUUGUAGCUGUC-GUUUUAUUUGCAGCUCAGCUAAAUGGAAAGCGACUAACCCUUAGUGGCUCCAUUCCCCCA-----AUCCA---------CAAUCCCAAAUC
---------------.((((((((((..-(((........))).))))))((((((..((.((((.....)))).))))))))......-----.....---------......)))).. ( -19.00)
>DroAna_CAF1 171884 104 - 1
CUGCUUUUACUAGCCUCCUAUAGCUGCCCGUUUUAUUUGCAGCUAAACUAAAUGGCA-GCAAGC-AUCCUUAGUGACCCCAUGAGGGGG-----AUACCUAGUC----CAGU-CCA----
.(((((...((.(((.....(((((((...........)))))))........))))-).))))-)......(.((((((....)))((-----((.....)))----).))-)).---- ( -26.92)
>consensus
_______________UUUUGUAGCUGUC_GUUUUAUUUGCAGCUCAGCUAAAUGGAAAGCGACUAACCCUUAGUGGCUCCAUUCCCCCC_____AUCCCUA_UC____CAAUCCCA____
..................((.((((((...........))))))))....((((((..((.((((.....)))).))))))))..................................... (-12.94 = -14.18 +   1.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:42 2006