Locus 1685

Sequence ID 3L_DroMel_CAF1
Location 4,929,385 – 4,929,479
Length 94
Max. P 0.936392
window2599

overview

Window 9

Location 4,929,385 – 4,929,479
Length 94
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 81.74
Mean single sequence MFE -16.92
Consensus MFE -15.35
Energy contribution -15.41
Covariance contribution 0.06
Combinations/Pair 1.08
Mean z-score -2.05
Structure conservation index 0.91
SVM decision value 1.25
SVM RNA-class probability 0.936392
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4929385 94 + 23771897
CAUUUUUGCCAAUGAGGCGCAAACGCCUUUUAUGCGUCCCAAUAAAUUCUCGCU-UCCGGCAUCUAAAUUCGCCCCCACUAUAUCCUG--CCCCACC
......((((...((((((....))))))....(((..............))).-...))))..........................--....... ( -15.94)
>DroPse_CAF1 202457 94 + 1
---UUCUGCCAAUGAGGCGCAAACGCCUUUUAUGCGUUUCAAUAAAUUCUCGCUUUCCGGCUUCCACAGCCUCCACUUCUGUAUCCUUUUUCCCACC
---..........((((((.((((((.......)))))))...........(((....))).......)))))........................ ( -16.10)
>DroSec_CAF1 150645 89 + 1
CAUUUUUGCCAAUGAGGCGCAAACGCCUUUCAUGCGUCCCAAUAAAUUCUCGCU-UCCGGCAUCUAA-----CUCCCACUAUAUCCUG--CCCCGCC
......((((...((((((....))))))....(((..............))).-...)))).....-----................--....... ( -15.94)
>DroEre_CAF1 152358 90 + 1
CAUUUUUGCCAAUGAGGCGCAAACGCCUUUUAUGCGUACCAAUAAAUUCUCGCU-UCCGGCGUCCAAACUCG----CCCCAUAUCCUG--CCCCUCC
.............((((.(((.((((.......)))).................-...((((........))----))........))--).)))). ( -18.90)
>DroYak_CAF1 155652 90 + 1
CAUUUUUGCCAAUGAGGCGCAAACGCCUUUUAUGCGUCCCAAUAAAUUCACGCU-UCCGGCAUCUAAAUUUG----CCCCAUAUCCUG--CCCCUCA
............(((((.(((.((((.......)))).................-...((((........))----))........))--).))))) ( -18.70)
>DroAna_CAF1 159842 89 + 1
CAUUUUUGCCAAUGAGGCGCAAACGCCUUUUAUGCGUUCCAAUAAAUUCUCGCU-UCCGGCAUUCAAGUUCU-----CCUCUUUCCUG--CCCCCGG
......((((...((((((....))))))....(((..............))).-...))))..........-----...........--....... ( -15.94)
>consensus
CAUUUUUGCCAAUGAGGCGCAAACGCCUUUUAUGCGUCCCAAUAAAUUCUCGCU_UCCGGCAUCCAAAUUCG____CCCUAUAUCCUG__CCCCACC
......((((...((((((....))))))....(((..............))).....))))................................... (-15.35 = -15.41 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:37 2006