Locus 1684

Sequence ID 3L_DroMel_CAF1
Location 4,911,761 – 4,911,855
Length 94
Max. P 0.544615
window2598

overview

Window 8

Location 4,911,761 – 4,911,855
Length 94
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 84.89
Mean single sequence MFE -37.95
Consensus MFE -26.48
Energy contribution -27.54
Covariance contribution 1.06
Combinations/Pair 1.07
Mean z-score -2.42
Structure conservation index 0.70
SVM decision value 0.02
SVM RNA-class probability 0.544615
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4911761 94 + 23771897
CUUACCAUUACAAUAACCGUUG---------UUGUCGGCGGGACAGUAAAAUGGCGCCCAAUUGCCAACUGGC-------A-------AUUGGCGCUUCCGGCGGCUCAUUGGCUGC
................(((.((---------..((((.(((((((......))(((((.(((((((....)))-------)-------))))))))))))).)))).)).))).... ( -36.80)
>DroSec_CAF1 132908 101 + 1
CUUACCAUUACAAUAACCGUUG---------UUGUCGGCGGGACAGUAAAAUGGCGCCCAAUUGCCAACUGGC-------AAUUGGCAAUUGGCGCUUCCGGCGGCUCAUUGGCUGC
................(((.((---------..((((.(((((((......))(((((.(((((((((.....-------..))))))))))))))))))).)))).)).))).... ( -37.80)
>DroSim_CAF1 142844 101 + 1
CUUACCAUUACAAUAACCGUUG---------UUGUCGGCGGGACAGUAAAAUGGCGCCCAAUUGCCAACUGGC-------AAUUGGCAAUUGGCGCUUCCGGCGGCUCAUUGGCUGC
................(((.((---------..((((.(((((((......))(((((.(((((((((.....-------..))))))))))))))))))).)))).)).))).... ( -37.80)
>DroEre_CAF1 134279 101 + 1
CUUACCAUUACAAUAACCGUUG---------UUGUCGGCGGGACAGUAAAAUGGCGCCCAAUUGCCCAUUGCC-------AACUGGCAAUUGGCGCUUCCGGCGGCUCAUUGGCUAC
................(((.((---------..((((.(((((((......))(((((.(((((((.......-------....))))))))))))))))).)))).)).))).... ( -34.80)
>DroYak_CAF1 137249 108 + 1
CUUACCAUUACAAUAACCGUUG---------CUGUCGGCGGGACAGUAAAACGGCGCCCAAUUGCCAACUGGCAAUUCGCAAUUGGCAAUUGGCGCUUCCGGCGGCUCAUUGGCUAC
..........((((..((((((---------(((((.....)))))))...(((.(((((((((((((...((.....))..))))))))))).))..)))))))...))))..... ( -41.00)
>DroAna_CAF1 141195 102 + 1
C-GGGAGUUACAAGAGCCGUCGUUCUUGUUUUUGUCUGCGGGCCAGUAAAAUGGCGCCCAAUUG-------GC-------AAUUGGCAAUUGGCGCUUCCGGCGGCUCAUUGGCUAC
.-...(((((...((((((((......((........))((((((......))))(((((((((-------.(-------....).))))))).))..))))))))))..))))).. ( -39.50)
>consensus
CUUACCAUUACAAUAACCGUUG_________UUGUCGGCGGGACAGUAAAAUGGCGCCCAAUUGCCAACUGGC_______AAUUGGCAAUUGGCGCUUCCGGCGGCUCAUUGGCUAC
..........((((..((((((.........(((((.....)))))......((((((.(((((((..................)))))))))))))..))))))...))))..... (-26.48 = -27.54 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:36 2006