Locus 1682

Sequence ID 3L_DroMel_CAF1
Location 4,909,203 – 4,909,301
Length 98
Max. P 0.684581
window2593

overview

Window 3

Location 4,909,203 – 4,909,301
Length 98
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 89.79
Mean single sequence MFE -28.25
Consensus MFE -19.92
Energy contribution -20.24
Covariance contribution 0.32
Combinations/Pair 1.13
Mean z-score -2.18
Structure conservation index 0.71
SVM decision value 0.31
SVM RNA-class probability 0.684581
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4909203 98 - 23771897
UGGGCCCAUAUGAGAGUGGGC----CUGGGUUUGGGGAGCUUAAAGGGCUCCG------GCGACGAUAGACGACAAACAAAAAUGCAACAAAAGAAAAGUGCAAUGUU
.((((((((......))))))----))..(((((.((((((.....))))))(------....).........))))).....((((............))))..... ( -31.50)
>DroSec_CAF1 130437 98 - 1
UGGGCCCAUAUGAGAGUGGGC----CUGGGUUUGGGGGGCUUAAAGGGCUCCG------GCGACAAUAGACGACAAACAAAAAUGCAACAAAAGAAAAGUGCAAUGUU
.((((((((......))))))----))..(((((.((((((.....))))))(------....).........))))).....((((............))))..... ( -30.60)
>DroSim_CAF1 140445 98 - 1
UGGGCCCAUAUGAGAGUGGGC----CUGGGUUUGGGGGGCUUAAAGGGCUCCG------GCGACAAUAGACGACAAACAAAAAUGCAACAAAAGAAAAGUGCAAUGUU
.((((((((......))))))----))..(((((.((((((.....))))))(------....).........))))).....((((............))))..... ( -30.60)
>DroEre_CAF1 131756 100 - 1
UUGGCCAAUAUGAGAGUGGGCCCGAAUGGGU-UG-GGGGCCAAAAGGGCUCCG------GCGACAAUGGACGACACACAAAAAUGCAACAAAAGAAAAGUGCAAUGUU
...(((..(((....)))(((((....))))-).-((((((.....)))))))------))((((.((.((...........................)).)).)))) ( -26.53)
>DroYak_CAF1 134558 103 - 1
UUGGCCAAUAUGAGAAUGGGC----AUGGGUUUG-CGGGCUUAAAGGGCUCCGGCUACGGCGACAAUAGACGACAAACAAAAAUGCAACAAAAGAAAUGUGCAAUGUU
.((.(((.........))).)----)...(((((-((((((.....))).)))((....))............))))).....((((.((.......))))))..... ( -22.00)
>consensus
UGGGCCCAUAUGAGAGUGGGC____CUGGGUUUGGGGGGCUUAAAGGGCUCCG______GCGACAAUAGACGACAAACAAAAAUGCAACAAAAGAAAAGUGCAAUGUU
...((((((......))))))........(((((.((((((.....))))))........((........)).))))).....((((............))))..... (-19.92 = -20.24 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:31 2006