Locus 1681

Sequence ID 3L_DroMel_CAF1
Location 4,908,856 – 4,908,958
Length 102
Max. P 0.640352
window2592

overview

Window 2

Location 4,908,856 – 4,908,958
Length 102
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 75.49
Mean single sequence MFE -31.48
Consensus MFE -17.64
Energy contribution -20.42
Covariance contribution 2.78
Combinations/Pair 1.17
Mean z-score -1.58
Structure conservation index 0.56
SVM decision value 0.22
SVM RNA-class probability 0.640352
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4908856 102 - 23771897
GGAAUUUCAAAACUUUUCCUUUCAGUGCACUUUCGCUUAAAGGCCCCGGUCCAGGGUGUUUGGUCAAUUGCCAUGCGAGGAUCGGGGCCCUUUGGGCACAUU
((((...........))))...............((((((((((((((((((....(((.((((.....)))).))).))))))))).)))))))))..... ( -40.60)
>DroSec_CAF1 130024 102 - 1
AGAUUUAGAAACCUAUUCCUUCCAGUGCACUUUCGCUUAAAGGCCCCGGUUCAGCGUGUUUGGUCAAUUGCCAUGCGAGGAUCGGGGCCCUCUGGGCACAUU
....................(((((.((......)).....(((((((((((..(((...((((.....)))).))).)))))))))))..)))))...... ( -33.40)
>DroSim_CAF1 140033 102 - 1
GGAAUAUGAAACCUUUUCCUUUCAGUGCACUUUCGCUUAAAUGCCCCGGUUCAGCGUGUUUGGUCAAUUGCCAUGCGAGGAUCGGGGCCCUCUGGGCACAUU
((((...........)))).....((((..............((((((((((..(((...((((.....)))).))).))))))))))((...))))))... ( -32.10)
>DroEre_CAF1 131455 102 - 1
AGAAUUGGUAGCAGGUUCUUUUCAGUGUGCCUUAGCUUAAAGGCCCAGUUUCAGCGUGUUUGCUCAAUUGCCAUGCGAGGAUCGGGGCCCUCUGGCCACAUU
.(((..((........))..))).(((.(((..((......(((((...(((.(((((...((......)))))))..)))...)))))))..))))))... ( -30.60)
>DroYak_CAF1 134235 102 - 1
AUAAUUUGUAAGCUUUUCCUUUCAGUGUGCUUUAGCUUUAAGGCCCCGGUUCAGCGGGUUUGGUCAAUUGCCAUGCGAGGAUCGGGGCCCUCUGGCCACAUU
.......................((((((.....(((....(((((((((((.((((((..........))).)))..)))))))))))....))))))))) ( -34.30)
>DroAna_CAF1 138344 79 - 1
---------GAACUUUU--UCUCAGUACCCUUG-----GA-------GUACCAAGGCUCUUGGUCAACGGCCAAACAAUAAUCGAGGCCCUCUGGACACAUU
---------........--((.(((...(((((-----((-------((......))))(((((.....)))))........)))))....)))))...... ( -17.90)
>consensus
AGAAUUUGAAACCUUUUCCUUUCAGUGCACUUUCGCUUAAAGGCCCCGGUUCAGCGUGUUUGGUCAAUUGCCAUGCGAGGAUCGGGGCCCUCUGGGCACAUU
.....................((((.((......)).....(((((((((((....(((.((((.....)))).))).)))))))))))..))))....... (-17.64 = -20.42 +   2.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:30 2006