Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 4,908,266 – 4,908,366 |
Length | 100 |
Max. P | 0.500000 |
Location | 4,908,266 – 4,908,366 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 81.74 |
Mean single sequence MFE | -24.40 |
Consensus MFE | -17.41 |
Energy contribution | -18.38 |
Covariance contribution | 0.98 |
Combinations/Pair | 1.13 |
Mean z-score | -1.25 |
Structure conservation index | 0.71 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4908266 100 - 23771897 CUCAGUUUAUUAGUCCACAGACAGGCGGCUAAUGAUGCCUGGCCAGGGU-UGGCCAGCACUCA--AAAAAUUACGUAA-AAAAGCGUUAGGAAUGAGGGCUUAU ......((((((((((........).))))))))).((((((((.....-.)))))...((((--.......((((..-....))))......))))))).... ( -27.32) >DroSec_CAF1 129435 101 - 1 CUCAGUUUAUUAGUCCACAGACAGGCGGCUAAUGAUGCCUGGCUAGGGUUUGGCCAGCACUCA--AAAAAUUACAUAA-AAAAGCGUUAGGAAUGAGAGUUUAU ((((..((((((((((........).)))))))))(((.(((((((...))))))))))....--.............-..............))))....... ( -21.40) >DroSim_CAF1 139444 101 - 1 CUCAGUUUAUUAGUCCACAGACAGGCGGCUAAUGAUGCCUGGCCAGGGUUUGGCCAGCACUCA--AAAAAUUACAUAA-AAAAGCGUUAGGAAUGAGAGUUUAU ((((..((((((((((........).)))))))))(((.(((((((...))))))))))....--.............-..............))))....... ( -23.70) >DroEre_CAF1 130907 99 - 1 CUCAGUUUAUUAGUCCACAGACAGGUGGCUAAUGAUGCCUGGCCAGGGC-UGGUCAGCACUCG--AAAAAUGGAAAACA--AAAGAACGGGAGUGGGAGUUUAU ((((..(((((((.((((......)))))))))))(((.((((((....-)))))))))((((--.....((.....))--......))))..))))....... ( -27.40) >DroYak_CAF1 133618 101 - 1 CUCAGUUUAUUAGUCCACAGACAGGUGGCUAAUGAUGCCUGGCCAGGGU-UGGCCAGCACUCA--AAAAAUUACACACCAAAAACAUUAGGAGUGAGAGUUUAU (((...(((((((.((((......)))))))))))(((.(((((.....-.))))))))....--........(((.((..........)).))).)))..... ( -29.60) >DroAna_CAF1 137756 99 - 1 CUCAGUUUAUUAGUCCACAGACAGGCGGCUAAUGAUGCCUGGCCAAGGA-UAUGAUGCACUUACAAAAAA-UAUACCA-AAAA-UAC-AAAACAAAAAAUAUUC ...(((.(((((((((.....((((((........)))))).....)))-).))))).))).........-.......-....-...-................ ( -17.00) >consensus CUCAGUUUAUUAGUCCACAGACAGGCGGCUAAUGAUGCCUGGCCAGGGU_UGGCCAGCACUCA__AAAAAUUACAUAA_AAAAGCAUUAGGAAUGAGAGUUUAU ((((..((((((((((........).)))))))))(((.((((((.....)))))))))..................................))))....... (-17.41 = -18.38 + 0.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:29 2006