Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 4,906,508 – 4,906,606 |
Length | 98 |
Max. P | 0.797437 |
Location | 4,906,508 – 4,906,606 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 83.20 |
Mean single sequence MFE | -30.21 |
Consensus MFE | -20.03 |
Energy contribution | -20.59 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.24 |
Mean z-score | -2.89 |
Structure conservation index | 0.66 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.797437 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4906508 98 + 23771897 AGGCUAAUGAAGUAGGAAUCAACAACGGUAAUCUCGUUGUGCCCCUGGGACAUUAAUCCUCUGAAUGGAUGAUGAGCAAGAGGAAAUAUUUCAUUAGU ..((((((((((((....((.(((((((.....))))))).((....)).(((((.(((.......)))))))).....)).....)))))))))))) ( -28.30) >DroSec_CAF1 127702 98 + 1 AGGCUAAUGAAGUAGGAAUCAACAGCGGUAAUCUCGUUGUGCCCCUGGGACAUUAAUCCUCUGAAUGGAUGAUGGGCAGGAGGAAAUAUUUCAUUAGU ..((((((((((((.......(((((((.....))))))).((((((...(((((.(((.......))))))))..)))).))...)))))))))))) ( -34.00) >DroSim_CAF1 137688 98 + 1 AGGCUAAUGAAGUAGGAAUCAACAGCGGUAAUCUCGUUGUGCCCCUGGGACAUUAAUCCUCUGAAUGGAUGAUGGGCAGGAGGAAAUAUUUCAUUAGU ..((((((((((((.......(((((((.....))))))).((((((...(((((.(((.......))))))))..)))).))...)))))))))))) ( -34.00) >DroEre_CAF1 129204 98 + 1 AGGCUAAUGAAGAAGGCAUCAGCAGCGGUAAUCUCGUUGCGCCCCAGGGACAUUAAUCCUCCGAAUGGAUAAUGAGCAGGAGGAAAUACUUCAUUAGU ..((((((((((..(((....(((((((.....)))))))))).............((((((................))))))....)))))))))) ( -32.89) >DroYak_CAF1 131812 98 + 1 AGGCUAAUGAAGAAGGUAUCAACAGCGGCAAGCUCGUUGUGCCCCAAGGACAUUAAUCCUCUGAAUGGUUGAUGAGCAGGAGGAAAUAUUUCAUUAGU ..((((((((((..((((.(((((((.....))).)))))))).............((((((.....(((....))).))))))....)))))))))) ( -30.20) >DroAna_CAF1 136045 91 + 1 AGGCUAAUGAAAGAAAAAUCAACAGCCGUAAUCAUGCAUUACCCCAAGGAAAUGAGUGGUCUCUU-------UGGGGAGUAGGAAGCACUUCAUUAAU .((((..(((........)))..)))).......(((.((.(((((((((.((.....)).))))-------))))).....)).))).......... ( -21.90) >consensus AGGCUAAUGAAGUAGGAAUCAACAGCGGUAAUCUCGUUGUGCCCCAGGGACAUUAAUCCUCUGAAUGGAUGAUGAGCAGGAGGAAAUAUUUCAUUAGU ..((((((((((.........(((((((.....))))))).((....)).......((((((................))))))....)))))))))) (-20.03 = -20.59 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:28 2006