Locus 1678

Sequence ID 3L_DroMel_CAF1
Location 4,900,872 – 4,900,963
Length 91
Max. P 0.667481
window2589

overview

Window 9

Location 4,900,872 – 4,900,963
Length 91
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 82.61
Mean single sequence MFE -25.50
Consensus MFE -17.82
Energy contribution -18.88
Covariance contribution 1.06
Combinations/Pair 1.31
Mean z-score -1.88
Structure conservation index 0.70
SVM decision value 0.28
SVM RNA-class probability 0.667481
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4900872 91 - 23771897
AAAGCGCAGAAGGCCAAGACGUUGGCUGACAAUUUUUAUUGAAACUUGUUGAACUGUCGCCGGUAAUUGUUUGCCUUUUGGGCUUUGUUUG----------
(((((.((((((((..((((((((((.((((.(((..((........)).))).)))))))))....))))))))))))).))))).....---------- ( -28.80)
>DroSec_CAF1 122036 91 - 1
AAAGCGCAGAAGGCCAAGACGUUGGCAGACAAUUUUUAUUGAAACUUGUUGAACUGUCGCCGGUAAUUGUUUGCCUUUUGGGCUUUGUUUG----------
(((((.(((((((((((..((.((((((((((((((....)))).))))....)))))).))....)))...)))))))).))))).....---------- ( -28.80)
>DroSim_CAF1 131989 91 - 1
AAAGCGCAGAAGGCCAAGACGGUGGCUGACAAUUUUUAUUGAAACUUGUUGAACUGUCGCCGGUAAUUGUUUGCCUUUUGGGCUUUGUUUG----------
(((((.(((((((((((..(((((((.(((((((((....)))).))))).....)))))))....)))...)))))))).))))).....---------- ( -32.90)
>DroEre_CAF1 123457 78 - 1
AAAGCGCAGAAGGCCAAGACGUUGGCUGACAAUUUUUAUUGGAACUUGUUGAACUGUCGCCGUUAAUUGUUUGCCUUU-----------------------
...((((((..((((((....))))))(((((.(((.....))).)))))...))).)))..................----------------------- ( -16.90)
>DroYak_CAF1 125134 91 - 1
AAAGCGCAGAAGGCCAAGACGUUGGCUGGCAAUUUUUAUUGAGACUUGUUGAACUGUCGGCGGCAAUUGUUUGCCUUUUGGGUUUUGUUUG----------
(((((.((((((((..(((((...((((.((((....)))).(((..........)))..))))...))))))))))))).))))).....---------- ( -28.20)
>DroAna_CAF1 129217 99 - 1
AGAAACCAAAAGUCUUUGACA--GGCUGACAAUUUUUAUUGAAACUUGUUGAACUUUUUCCAGUAAUUGUUUGCCUUUUGGGCAUUGUUUAUAUUCUGUCU
((((...((((((..(..(((--((.(..((((....))))..))))))..)))))))....((((.....((((.....))))....)))).)))).... ( -17.40)
>consensus
AAAGCGCAGAAGGCCAAGACGUUGGCUGACAAUUUUUAUUGAAACUUGUUGAACUGUCGCCGGUAAUUGUUUGCCUUUUGGGCUUUGUUUG__________
(((((.((((((((..(((((...((((((((((((....)))).)))).((....))..))))...))))))))))))).)))))............... (-17.82 = -18.88 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:27 2006