Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 4,890,269 – 4,890,369 |
Length | 100 |
Max. P | 0.529617 |
Location | 4,890,269 – 4,890,369 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 80.75 |
Mean single sequence MFE | -26.45 |
Consensus MFE | -17.12 |
Energy contribution | -18.29 |
Covariance contribution | 1.17 |
Combinations/Pair | 1.18 |
Mean z-score | -1.41 |
Structure conservation index | 0.65 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.529617 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4890269 100 - 23771897 UUAGUGCGAACUUUAUGGGCAUAUAAAAGCGCAUCAGGUCGCACACAAGUGCCAAAAGCAUAC-AGUUCCGUAUGUUUGAAGUGGCUUCGAAUCAGUUGCU ...((((((.(((.(((.((........)).))).)))))))))......((((.((((((((-......))))))))....))))............... ( -32.30) >DroGri_CAF1 144052 90 - 1 UUAGUGCGAAAUUAAUGGGCACAACAAGUAA---CGACUCUCACAUCUAUGCAAAAAGCCGACAAGCUCAUAUUGUUUGA----GCUUCAGUUUUGA---- ...((((...........)))).........---....................(((((.((..((((((.......)))----))))).)))))..---- ( -15.50) >DroSec_CAF1 111664 100 - 1 UUAGUGCGAACUUUAUGGGCAUAUAAAAGCGCAUCAGGUCGCACACCAGUGCCAAAAGCAUCC-AGUUCCGUAUGUUUGAAGUGGCUUCGAAUCAGAUGCU ...((((((.(((.(((.((........)).))).)))))))))............((((((.-.((((.(...(((......)))..)))))..)))))) ( -28.20) >DroSim_CAF1 121114 100 - 1 UUAGUGCGAACUUUAUGGGCAUAUAAAAGCGCAUCAGGUCGCACACCAGUGCCAAAAGCAUCC-AGUUCCGUAUGUUUGAAGUGGCUUCGAAUCAGAUGCU ...((((((.(((.(((.((........)).))).)))))))))............((((((.-.((((.(...(((......)))..)))))..)))))) ( -28.20) >DroEre_CAF1 112909 100 - 1 UUAGUGCGAACUUGAUGGGCAUAUAAAAGUACAUCAGGUCGCACACCAGUGCCAAAAGCUUCC-AGCUCCGUAUGUUUGAAGUGGCUUCAGAUCAGAUUCC ...((((((.(((((((..(........)..)))))))))))))......(((....(((((.-(((.......))).))))))))............... ( -30.80) >DroYak_CAF1 114201 96 - 1 UUAGUGCGAACUUUAUGGGCAUAUAAAAGCGUACCAGGUCGCACUCCAGUGCCAAAAGCUUCC-AGUUCAGUAUGUUUGAAAUGGCUUCAGAUCAGA---- ...(((((...((((((....))))))..)))))..((((((((....))))...(((((...-..(((((.....)))))..)))))..))))...---- ( -23.70) >consensus UUAGUGCGAACUUUAUGGGCAUAUAAAAGCGCAUCAGGUCGCACACCAGUGCCAAAAGCAUCC_AGUUCCGUAUGUUUGAAGUGGCUUCAAAUCAGAUGCU ...((((((.(((.(((.((........)).))).)))))))))......((((.((((...............))))....))))............... (-17.12 = -18.29 + 1.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:25 2006