| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 4,888,587 – 4,888,686 |
| Length | 99 |
| Max. P | 0.877409 |
| Location | 4,888,587 – 4,888,686 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 91.71 |
| Mean single sequence MFE | -18.31 |
| Consensus MFE | -16.20 |
| Energy contribution | -16.20 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.88 |
| SVM decision value | 0.90 |
| SVM RNA-class probability | 0.877409 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4888587 99 + 23771897 CACAAAACAGACAAAAAGCGAAAUCGCUUAGGCGCAACCACCCGCAACCGAGGAGCCUGC------AACACCACAUCCAGCCCAUCCCGUUUCAAGUCGAUCCCC .........(((...(((((....))))).(((((........))......(((...((.------.....))..))).))).............)))....... ( -18.30) >DroSec_CAF1 109894 99 + 1 CACAAAACAGACAAAAAGCGAAAUCGCUUAGGCGCAACCACCCGCAACCGAGGAGCCUGU------AACCCCACAUCCAGCCCAUCCCGUUUCAAGUCUAUCCCC ........((((...(((((....))))).(((((........))......(((...((.------.....))..))).))).............))))...... ( -19.30) >DroSim_CAF1 119419 99 + 1 CACAAAACAGACAAAAAGCGAAAUCGCUUAGGCGCAACCACCCGCAACCGAGGAGCCUGU------AACCCCACAUCCAGCCCAUCCCGUUUCAAGUCGAUCCCA .........(((...(((((....))))).(((((........))......(((...((.------.....))..))).))).............)))....... ( -18.60) >DroEre_CAF1 111270 98 + 1 CACAAAACAGACAAAAAGCGAAAUCGCUUAGGCGCAACCACCCGCAACCGAGGAGCCUGU------AGCCCCGCAUCCAAC-CAUCCCAUUGCAAGUCGAUCCCC .........(((...(((((....))))).((((((..(.((((....)).)).)..)))------.)))..(((......-........)))..)))....... ( -19.04) >DroYak_CAF1 112521 104 + 1 CACAAAACAGACAAAAAGCGAUAUCGCUUAGGCGCAACCACCCGCAACCGAGGAGCCUGUCCAACCAUUCCCACAUCCAAC-CAUCCCAUUCCAAGUCGAUCCCC .........(((...(((((....)))))((((((........))..(....).)))).......................-.............)))....... ( -16.30) >consensus CACAAAACAGACAAAAAGCGAAAUCGCUUAGGCGCAACCACCCGCAACCGAGGAGCCUGU______AACCCCACAUCCAGCCCAUCCCGUUUCAAGUCGAUCCCC .........(((...(((((....)))))((((((........))..(....).)))).....................................)))....... (-16.20 = -16.20 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:23 2006