Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 4,861,167 – 4,861,281 |
Length | 114 |
Max. P | 0.998559 |
Location | 4,861,167 – 4,861,281 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 71.93 |
Mean single sequence MFE | -21.84 |
Consensus MFE | -9.16 |
Energy contribution | -9.44 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.11 |
Mean z-score | -2.67 |
Structure conservation index | 0.42 |
SVM decision value | 3.14 |
SVM RNA-class probability | 0.998559 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4861167 114 + 23771897 UUUCAUCCUCAAACUAAAAUUUCUUUUCAAUCUACUGACUUUAUUCUCUGUGUUCCGGAAACUCCGUUGCGCUGAAGCAUAAAAUCACCAUAGCAUGUAGCUGGUUUUAGACAU .............(((((((...............(((.(((((.(((.((((..(((.....)))..)))).).)).))))).)))...((((.....))))))))))).... ( -22.40) >DroSec_CAF1 88932 91 + 1 UUUCAUCCCCAAAUUAAAAUUUCUUUUCCAUCUACUGAUUUUAUUCUCUGUGUUCCGGAAACUCCGUUGCGCUGAAGCAUAAAAUCACCA-----------------------U ...................................(((((((((.(((.((((..(((.....)))..)))).).)).)))))))))...-----------------------. ( -18.60) >DroSim_CAF1 93235 114 + 1 UUUCUUCCUCGAACUAAAAUUUCUUUUCCAUCUACUGACUUCAUUCUCUGUGUUCCGGAAACUCCGUUGCGCUGAAGCAUAAAAUCACCAUAGCAUGUAGCUGGUUUUAGACAU .............(((((((...............((.(((((......((((..(((.....)))..)))))))))))...........((((.....))))))))))).... ( -20.60) >DroEre_CAF1 90127 96 + 1 UUUCUUCCGCAAAUUAAGAUUUAUG------------------UUCCCUGUGUUCCGGAAACUCCGUUGCGCUGGAGCAUUAAAUCUCCGUAGCAUGUAGCUGGCUUUAGACAU ..(((...((......(((((((((------------------((((..((((..(((.....)))..)))).)))))).)))))))...((((.....))))))...)))... ( -30.20) >DroYak_CAF1 90408 91 + 1 UUUCUCCCUCAAAUUAAAACUUUAU------------------UUCUCUGUGUUUCGGAAACUCC-----GCUGAAGCAUAAAAUCUACAUAUCAUGUAGCUGGUUUUAUACAU ..............(((((((....------------------.....((((((((((.......-----.))))))))))....((((((...))))))..)))))))..... ( -17.40) >consensus UUUCUUCCUCAAAUUAAAAUUUCUUUUC_AUCUACUGA_UU_AUUCUCUGUGUUCCGGAAACUCCGUUGCGCUGAAGCAUAAAAUCACCAUAGCAUGUAGCUGGUUUUAGACAU ..............................................((.((((..(((.....)))..)))).))....................................... ( -9.16 = -9.44 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:23 2006